PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100109520081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MIKC_MADS
Protein Properties Length: 268aa    MW: 31068.2 Da    PI: 7.9504
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100109520081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.81.8e-301059251
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  rien++nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eyss
  Ote100109520081|100109520081 10 RIENNINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSS 59
                                  8***********************************************96 PP
2K-box107.61.4e-351031985100
                         K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                                   + +s+e +  ++++ e++kLk++ie Lqr++Rh++GedL+s+slk+Lq+Le qL+++lk+iRs+Kn+ll+++i+elq+kek
  Ote100109520081|100109520081 103 QLVSNEPQSPANWSLEHSKLKARIELLQRNHRHYMGEDLDSMSLKDLQNLELQLDTALKSIRSRKNQLLYDSISELQQKEK 183
                                   66667778889********************************************************************** PP

                         K-box  86 elqeenkaLrkklee 100
                                   ++qe+n +L+k+++e
  Ote100109520081|100109520081 184 AIQEQNSMLTKQIKE 198
                                   ************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.7E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.45161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-30269IPR002100Transcription factor, MADS-box
CDDcd002654.87E-38298No hitNo description
PRINTSPR004049.4E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-313859IPR002100Transcription factor, MADS-box
PfamPF014862.7E-29111196IPR002487Transcription factor, K-box
PROSITE profilePS5129716.639112202IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGRGKVELRR IENNINRQVT FSKRRAGLLK KAHEISVLCD AEVALIVFSH KGKLFEYSSD  60
SWYSPLSKVL LKNCGSSHPV ITNYQSMDRI LEKYERYSFA ERQLVSNEPQ SPANWSLEHS  120
KLKARIELLQ RNHRHYMGED LDSMSLKDLQ NLELQLDTAL KSIRSRKNQL LYDSISELQQ  180
KEKAIQEQNS MLTKQIKEKE EEMGQQQAHW DHQNHGHRAP PPFMMPHQYP CLNMGGVYNE  240
GEGMEGRRNE LDLTLDSLYS CNLGCFAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-21179175MEF2 CHIMERA
6byy_B4e-21179175MEF2 CHIMERA
6byy_C4e-21179175MEF2 CHIMERA
6byy_D4e-21179175MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021292999.11e-125truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S71e-120AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A4D9BP491e-137A0A4D9BP49_SALSN; MADS-box transcription factor, plant
STRINGEOY016281e-121(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]