PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100109180071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | bHLH | ||||||||
Protein Properties | Length: 470aa MW: 52109.8 Da PI: 6.2144 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.6 | 2.2e-13 | 333 | 379 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq Ote100109180071|100109180071 333 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYISDLQ 379 799***********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 6.3E-41 | 49 | 228 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.907 | 329 | 378 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.86E-14 | 332 | 383 | No hit | No description |
SuperFamily | SSF47459 | 2.75E-18 | 332 | 397 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-17 | 333 | 395 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.6E-11 | 333 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.7E-16 | 335 | 384 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MGSKLLLSDE DKAMVERVLG SEATENFAWL ASNNVLLEFS PSGLDLGVQQ ALCEIVEGSD 60 WTYAIYWHVS KSKSGKSALI WGDGHCRDPK GDEGEEKNGS WNENSVDGDG RKWVLHKIHS 120 CFGGTEDDNV AKKLDKVSNV EMFFLTSMYL AFPFDKPSTP SQSFNSGRSI WVSDPKSCLE 180 RYESRSYLAK LARLETVVFV PTKSGVVEIG SKRSLPENRS IIQSAKSIVV KPTLALARAA 240 PKIFGQELSV GGGGTRSGPI SISFSPKVED DSSESYDLQT LNGVSDDSEG KLLSKPVIPN 300 MEQAREDSFL VSDEQKPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNIS 360 KMDKASLLGD AIAYISDLQT KIRVMEAERG ILNSDVDFQE RHEDAVIRMS CPLDSHPVSR 420 VIKELREHQM AAPETTISIT DREIVHTFAI QTQDGAAHLL KEKLSAALLK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-29 | 327 | 389 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 3e-29 | 327 | 389 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 3e-29 | 327 | 389 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 3e-29 | 327 | 389 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 3e-29 | 327 | 389 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 3e-29 | 327 | 389 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 3e-29 | 327 | 389 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 3e-29 | 327 | 389 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00099 | PBM | Transfer from AT4G16430 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012831462.1 | 0.0 | PREDICTED: transcription factor bHLH3 | ||||
Swissprot | A0A3Q7H216 | 0.0 | MTB3_SOLLC; Transcription factor MTB3 | ||||
TrEMBL | A0A482JHU7 | 0.0 | A0A482JHU7_SALMI; BHLH3b | ||||
STRING | Migut.D00401.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6669 | 24 | 33 |
Publications ? help Back to Top | |||
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