PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100109180071
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 470aa    MW: 52109.8 Da    PI: 6.2144
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100109180071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-13333379455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                   +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Ote100109180071|100109180071 333 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYISDLQ 379
                                   799***********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.3E-4149228IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.907329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.86E-14332383No hitNo description
SuperFamilySSF474592.75E-18332397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-17333395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-11333379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-16335384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MGSKLLLSDE DKAMVERVLG SEATENFAWL ASNNVLLEFS PSGLDLGVQQ ALCEIVEGSD  60
WTYAIYWHVS KSKSGKSALI WGDGHCRDPK GDEGEEKNGS WNENSVDGDG RKWVLHKIHS  120
CFGGTEDDNV AKKLDKVSNV EMFFLTSMYL AFPFDKPSTP SQSFNSGRSI WVSDPKSCLE  180
RYESRSYLAK LARLETVVFV PTKSGVVEIG SKRSLPENRS IIQSAKSIVV KPTLALARAA  240
PKIFGQELSV GGGGTRSGPI SISFSPKVED DSSESYDLQT LNGVSDDSEG KLLSKPVIPN  300
MEQAREDSFL VSDEQKPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNIS  360
KMDKASLLGD AIAYISDLQT KIRVMEAERG ILNSDVDFQE RHEDAVIRMS CPLDSHPVSR  420
VIKELREHQM AAPETTISIT DREIVHTFAI QTQDGAAHLL KEKLSAALLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-29327389264Transcription factor MYC2
5gnj_B3e-29327389264Transcription factor MYC2
5gnj_E3e-29327389264Transcription factor MYC2
5gnj_F3e-29327389264Transcription factor MYC2
5gnj_G3e-29327389264Transcription factor MYC2
5gnj_I3e-29327389264Transcription factor MYC2
5gnj_M3e-29327389264Transcription factor MYC2
5gnj_N3e-29327389264Transcription factor MYC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831462.10.0PREDICTED: transcription factor bHLH3
SwissprotA0A3Q7H2160.0MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A482JHU70.0A0A482JHU7_SALMI; BHLH3b
STRINGMigut.D00401.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66692433
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]