PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100109020021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bZIP

Protein Properties

Length: 360aa MW: 40593.3 Da PI: 8.2161

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100109020021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.4	1.1e-11	74	105	2	33
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLee 33 + +k+ rr+++NReAAr+sR+RKka++++Le+ Ote100109020021\|100109020021 74 PTDKVMRRLAQNREAARKSRLRKKAYVQQLET 105 5789**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.7E-8	68	117	No hit	No description
SMART	SM00338	1.4E-5	73	131	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-8	75	105	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.772	75	117	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.98E-7	77	112	No hit	No description
PROSITE pattern	PS00036	0	80	95	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.4E-27	163	238	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MNSTSTQFVP SRRMGIYEPI HQMAMWGDFK GNTCLDTSSP IILEVDPKLD NQSEDTSHGT 60 VGPSNKYEQE ASKPTDKVMR RLAQNREAAR KSRLRKKAYV QQLETSKLRL LQLEQELGRA 120 QKQGLYTGSA LDASPLGYGG STNPGIATFE MEYGHWVEEQ DRQISDLRKA LQTEIGVSEL 180 QIFVDGGMRH YFNLFTMKAT AAKADVFYLM SGMWKTSAER FFFWIGGFRP SELLKVLLPH 240 LEPLSEQQRL DLGTLAQLCQ QAEDALSQGM EKLHQILGEA IAKHLGEGNY LPQIGAAIEK 300 LEALVRFVGQ ADHLRQETLQ QISRILTTRQ AARGLLALGE YFQRLRALSS LWSSRPRELS

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MNSTSTQFVP SRRMGIYEPI HQMAMWGDFK GNTCLDTSSP IILEVDPKLD NQSEDTSHGT  60
VGPSNKYEQE ASKPTDKVMR RLAQNREAAR KSRLRKKAYV QQLETSKLRL LQLEQELGRA  120
QKQGLYTGSA LDASPLGYGG STNPGIATFE MEYGHWVEEQ DRQISDLRKA LQTEIGVSEL  180
QIFVDGGMRH YFNLFTMKAT AAKADVFYLM SGMWKTSAER FFFWIGGFRP SELLKVLLPH  240
LEPLSEQQRL DLGTLAQLCQ QAEDALSQGM EKLHQILGEA IAKHLGEGNY LPQIGAAIEK  300
LEALVRFVGQ ADHLRQETLQ QISRILTTRQ AARGLLALGE YFQRLRALSS LWSSRPRELS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00642	SELEX	Transfer from LOC107771743	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097617.1	0.0	TGACG-sequence-specific DNA-binding protein TGA-1A isoform X4
Swissprot	P14232	1e-175	TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBL	A0A4D9AZ45	0.0	A0A4D9AZ45_SALSN; Transcription factor TGA
STRING	Migut.L00088.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Publications ? help Back to Top
Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems. Plant Mol. Biol., 2000. 42(5): p. 679-88 [PMID:10809441] Johnson C,Boden E,Desai M,Pascuzzi P,Arias J In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor. Plant J., 2001. 28(2): p. 237-43 [PMID:11722767] Katagiri F,Seipel K,Chua NH Identification of a novel dimer stabilization region in a plant bZIP transcription activator. Mol. Cell. Biol., 1992. 12(11): p. 4809-16 [PMID:1406663] Miao ZH,Lam E Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants. Plant J., 1995. 7(6): p. 887-96 [PMID:7599649] Pascuzzi P,Hamilton D,Bodily K,Arias J Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor. J. Biol. Chem., 1998. 273(41): p. 26631-7 [PMID:9756903]