PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100108820071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family TALE
Protein Properties Length: 265aa    MW: 29592 Da    PI: 7.019
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100108820071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.74.1e-081782112154
                                   HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                   k +yp++e++++L +++gL+ +q+ +WF N+R +
  Ote100108820071|100108820071 178 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 211
                                   469*****************************87 PP
2ELK22.72.4e-08132153122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELKh+L++ Y+++++++++E++
  Ote100108820071|100108820071 132 ELKHELKQDYKEKIVDIREEIL 153
                                   9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012561.8E-132475IPR005541KNOX2
PfamPF037914.1E-113674IPR005541KNOX2
PROSITE profilePS512139.865132152IPR005539ELK domain
SMARTSM011880.0049132153IPR005539ELK domain
PfamPF037891.1E-4132153IPR005539ELK domain
PROSITE profilePS5007111.726152215IPR001356Homeobox domain
SMARTSM003892.4E-11154219IPR001356Homeobox domain
SuperFamilySSF466891.75E-16154218IPR009057Homeodomain-like
CDDcd000861.70E-11155214No hitNo description
Gene3DG3DSA:1.10.10.601.4E-25159216IPR009057Homeodomain-like
PfamPF059206.1E-18172211IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
ASVGARLLPP NCHAGRPAAA NRRAAGAVAA GGGETHYVLL LSSFKEQLQQ HVRVHAMEAV  60
MACWELEQSL QSLTGVAPGE GTGATMSDDD EDQADSETNL FDESLDGADN MGFGPLVPTE  120
TERSLMERVR QELKHELKQD YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP  180
YPTEEDKARL VQETGLQLKQ INNWFINQRK RNWHSNPSSS STPKSKRKRF VLSPIFQDHN  240
FYTWANMNSG SCSGAGDKTA SEHFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A3e-13155219872Homeobox protein PKNOX1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtIsoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012845383.11e-138PREDICTED: homeobox protein knotted-1-like LET12, partial
SwissprotQ0J6N41e-123KNOSD_ORYSJ; Homeobox protein knotted-1-like 13
TrEMBLA0A022QSN11e-135A0A022QSN1_ERYGU; Uncharacterized protein (Fragment)
STRINGMigut.K00654.1.p1e-138(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472