PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100106800021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 332aa MW: 37368.3 Da PI: 5.1031 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.9 | 0.00042 | 33 | 50 | 2 | 19 |
HHHHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa 19 r +h+e E+rRR++iN++ Ote100106800021|100106800021 33 RSKHSETEQRRRSKINER 50 899*************85 PP | |||||||
2 | HLH | 23.9 | 7.5e-08 | 65 | 97 | 19 | 55 |
HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +f+ Lr+l+P++ ++K +Ka+ L ++++YI+ Lq Ote100106800021|100106800021 65 RFQILRDLIPEN----DQKRDKASFLLEVIQYIQFLQ 97 69*********9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.3E-19 | 29 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.156 | 31 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.55E-12 | 31 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.06E-13 | 33 | 101 | No hit | No description |
SMART | SM00353 | 1.0E-5 | 37 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-5 | 65 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 332 aa Download sequence Send to blast |
MGRSVSHVEE EETHDSYSPT DSKRVDRKAN TLRSKHSETE QRRRSKINER QAFNPFISCP 60 LPLFRFQILR DLIPENDQKR DKASFLLEVI QYIQFLQEKL QMYEGSCQGW SSESTKCLPL 120 RINSGPVESF IEHSQFEKNF YGHEDNMHPT LLSNVQNSVE SDMTGATLYK SADNLPMTTQ 180 NLALDMPLQA AIFESLPGQP HQGSFPESEQ LNQQSQSHFW QGRSCADDCS VPVYSANVEE 240 LKNESGEPGI SNVYSQGLLN SLKSSLQSSG VDLSQTSISV QLDVGKQTNS GSTNDVFSIK 300 DQENAPNLCY GSPMNIGKSY DHPPKRFRAD QT |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011085580.1 | 1e-161 | transcription factor BIM2 isoform X2 | ||||
TrEMBL | A0A0H3YB41 | 0.0 | A0A0H3YB41_SALMI; Basic helix-loop-helix transcription factor | ||||
STRING | Migut.H00581.1.p | 1e-112 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8947 | 18 | 21 |