PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100106760231

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 282aa MW: 32092.3 Da PI: 6.6269

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100106760231	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.1	6.8e-53	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 + pGfrFhPtdeelv +yL++kv++k+l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g Ote100106760231\|100106760231 15 MLPGFRFHPTDEELVGFYLRRKVHHKPLSI-ELIKQLDIYKFDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAG 94 579*************************.89***********8888999********************** PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +Wkatg+d++++s+ +++ +glkk+Lvfykgra +g+ktdW+mhe+rl Ote100106760231\|100106760231 95 FWKATGTDRPIYSSdGSKCIGLKKSLVFYKGRAARGTKTDWMMHEFRL 142 *********966677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-58	14	169	IPR003441	NAC domain
PROSITE profile	PS51005	57.244	15	169	IPR003441	NAC domain
Pfam	PF02365	6.7E-26	17	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0045770	Biological Process	positive regulation of asymmetric cell division
GO:0048103	Biological Process	somatic stem cell division
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MEHEGIENDR VDEVMLPGFR FHPTDEELVG FYLRRKVHHK PLSIELIKQL DIYKFDPWDL 60 PKLATTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSDG SKCIGLKKSL 120 VFYKGRAARG TKTDWMMHEF RLPSLSTKKH LHTDIPPTEA WAICRIFKKA NSNVQRALSQ 180 SWVSPVSDNT TSSSVSERNL QLSSSSYTST TYAPLQLPVY EWSEAIYDEL AAAPNMCIND 240 ASSLLLDMST SVLGDAITRD NVDFSAPCEI VQEYNAEVDG MI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-56	3	172	3	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-56	3	172	3	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-56	3	172	3	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-56	3	172	3	168	NO APICAL MERISTEM PROTEIN
4dul_A	1e-56	3	172	3	168	NAC domain-containing protein 19
4dul_B	1e-56	3	172	3	168	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071000.1	1e-125	putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	2e-99	FEZ_ARATH; Protein FEZ
TrEMBL	A0A2G9I2U7	1e-119	A0A2G9I2U7_9LAMI; Uncharacterized protein
STRING	Migut.E00095.1.p	1e-116	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2202	22	62

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]