PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100106560021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 124aa MW: 14001.1 Da PI: 4.6249 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.5 | 2.2e-20 | 2 | 52 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+++AeIrd s+++ + r++lg+f+taeeAa a+++a+ +++g+ Ote100106560021|100106560021 2 YRGVRRRP-WGKFAAEIRD-STRN-SVRVWLGTFDTAEEAALAYDQAAFAMRGA 52 9*******.**********.3433.6*************************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.2E-34 | 1 | 65 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.327 | 1 | 59 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-15 | 2 | 51 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.12E-21 | 2 | 60 | No hit | No description |
PRINTS | PR00367 | 1.2E-11 | 2 | 13 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-23 | 2 | 61 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-31 | 2 | 60 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 25 | 41 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 124 aa Download sequence Send to blast |
MYRGVRRRPW GKFAAEIRDS TRNSVRVWLG TFDTAEEAAL AYDQAAFAMR GAAAITNFPA 60 EVVWESLREM GLEEGCSPVL ALKKRHSMHX XXXXXXXXXX ESDVVVLEDL GSDYLEELLS 120 LSEN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-29 | 2 | 61 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00374 | DAP | Transfer from AT3G23240 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077236.1 | 3e-59 | ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 7e-52 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A2G9GVE5 | 2e-58 | A0A2G9GVE5_9LAMI; Uncharacterized protein | ||||
STRING | XP_009764919.1 | 2e-55 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Publications ? help Back to Top | |||
---|---|---|---|
|