PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100106560011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family M-type_MADS
Protein Properties Length: 296aa    MW: 34595.9 Da    PI: 4.7107
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100106560011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.53.6e-131151343
                                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                                  i+ k  r  tf kR++ ++KK +EL +LCd+ +++ii+ ++
  Ote100106560011|100106560011 11 IDKKKPRMATFKKRKQCMMKKLHELTTLCDVGACMIIYDPD 51
                                  788999*******************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.395148IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-17176IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-14160IPR002100Transcription factor, MADS-box
CDDcd002662.95E-21368No hitNo description
PRINTSPR004046.1E-6323IPR002100Transcription factor, MADS-box
PfamPF003197.5E-141152IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-62338IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-63859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MRRASLKMRL IDKKKPRMAT FKKRKQCMMK KLHELTTLCD VGACMIIYDP DEGATSIWPP  60
ENPSEVHRLI DAYYKTDSGR IKSHGVADFF GEKTRQVENA TLQLRKKNQN YYDDRLNFLD  120
ENQLRDLSAA LRLKSEMVRS RIQFLKQEYE TKVMLGLNFA QLHNDFTQFQ ESIDPATYYS  180
DHMVDDVSAA RFENDFIQFQ ESINPATATD SEMVRSRNQF LKQEYETKLF ENDFAQFQES  240
INPTTTDFEM VEEDSDQVWA DMIDGMEWAS MENVGCMDGN INYWAYLLQQ ADASVS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGMigut.B00770.1.p5e-32(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253