PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100106510021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 287aa MW: 33069.7 Da PI: 9.9858

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100106510021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	102.2	7e-32	64	141	50	128
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k++ +e+ewyfF++rd+ky++g r+nra+ sgyWkatg+dk+++s ++ vg+kk Lvfykgr pkg ktdW+mheyrl Ote100106510021\|100106510021 64 KAEFGENEWYFFTPRDRKYPNGVRPNRAAVSGYWKATGTDKAIYS-ASKYVGVKKALVFYKGRPPKGIKTDWIMHEYRL 141 5556899************************************.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.968	10	168	IPR003441	NAC domain
Pfam	PF02365	9.3E-14	55	141	IPR003441	NAC domain
SuperFamily	SSF101941	1.83E-39	64	168	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MVGSRISSGL PPGFRFHXXX XXXXXXXXXX XXXXTKPYQD PARFQSYPKS ISTNLTRGSC 60 PVNKAEFGEN EWYFFTPRDR KYPNGVRPNR AAVSGYWKAT GTDKAIYSAS KYVGVKKALV 120 FYKGRPPKGI KTDWIMHEYR LTESRSQPYK QNGSMRLDDW VLCRIYKKKN VGRSNLDQPK 180 IEDSFGQIAA ANVNHNQNYG SDQYKFPRTY SLTHLWEYDY MNSISHLLND NSSFNVGEDN 240 INGGFSRPDE KIPIGQPQQS TDSTKSRVHQ TTFVNPVYNE FHRELNA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-49	63	170	64	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-49	63	170	64	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-49	63	170	64	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-49	63	170	64	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-49	63	170	67	170	NAC domain-containing protein 19
3swm_B	2e-49	63	170	67	170	NAC domain-containing protein 19
3swm_C	2e-49	63	170	67	170	NAC domain-containing protein 19
3swm_D	2e-49	63	170	67	170	NAC domain-containing protein 19
3swp_A	2e-49	63	170	67	170	NAC domain-containing protein 19
3swp_B	2e-49	63	170	67	170	NAC domain-containing protein 19
3swp_C	2e-49	63	170	67	170	NAC domain-containing protein 19
3swp_D	2e-49	63	170	67	170	NAC domain-containing protein 19
4dul_A	2e-49	63	170	64	167	NAC domain-containing protein 19
4dul_B	2e-49	63	170	64	167	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269\|PubMed:29760199}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011075519.1	5e-97	LOW QUALITY PROTEIN: NAC transcription factor 29
Swissprot	K4BWV2	2e-85	NAP1_SOLLC; NAC domain-containing protein 1
TrEMBL	G8E9N6	1e-114	G8E9N6_SALMI; NAC domain protein NAC2
STRING	EOY01869	2e-88	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA746	24	103

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]