PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100105480151 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | AP2 | ||||||||
Protein Properties | Length: 448aa MW: 50451.2 Da PI: 6.0882 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.1e-17 | 123 | 172 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Ote100105480151|100105480151 123 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 172 78*******************......55************************998 PP | |||||||
2 | AP2 | 28.5 | 3.9e-09 | 215 | 254 | 1 | 44 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAak 44 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+ Ote100105480151|100105480151 215 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAAR 254 89********.7******5553..2.26**********99**98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.84E-16 | 123 | 181 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.0E-9 | 123 | 172 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.1E-32 | 124 | 186 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-17 | 124 | 180 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.79E-11 | 124 | 182 | No hit | No description |
PROSITE profile | PS51032 | 17.82 | 124 | 180 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.06E-22 | 215 | 284 | No hit | No description |
SuperFamily | SSF54171 | 2.88E-12 | 215 | 283 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.6E-5 | 215 | 254 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-25 | 216 | 288 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-10 | 216 | 282 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 10.178 | 216 | 282 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-6 | 217 | 228 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-6 | 264 | 284 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MLDLNLAINP SVPTTDRAET ASSSSAIYVE TSSTAVDENS CSDHLIDFDI RKDNGEYEES 60 EKLSCDYVMK EFFSGDQSGR PMQWLDLSEN HHELMEHTII TKEHQQKRQL MKKSRRGPRS 120 RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGLDADINFN 180 VNDYDEDFMQ MKNLTKEEFV HILRRQSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY 240 IYLGLFDSEI EAARSTLTDD ILWAYDKAAI KCNGKEAVTN FEPSTYEEEL NSEVAIGGWF 300 TCFLLSVIPP DGEKSNLNLS LSIAPPEGAP CEIHNMEICP ASASVAAQLS KTHGNVCEYP 360 FIWRGVNSCL SPLYEGTTIE KVVELDSSAN WSRNSRIDVH GDHSSPIFST AASSGFATSS 420 ATIHRLPFST RSPHHYLPPS NNESNYCL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077383.1 | 1e-172 | floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A2G9GII3 | 0.0 | A0A2G9GII3_9LAMI; Uncharacterized protein | ||||
STRING | XP_009606014.1 | 1e-138 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 |