PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100104750181

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

FAR1

Protein Properties

Length: 542aa MW: 62193 Da PI: 8.7844

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100104750181	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.3	6e-24	47	145	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkek 72 kfY+e+A ++GF +++s++s+ +g++++++fvC+++g++ + +++ +++ r +r+ ++t+Cka+++vk+++ Ote100104750181\|100104750181 47 KFYKEHALSIGFVAIIKASRRSRVSGKFIDAKFVCTRYGSKPDATTAtenseragkKKRGRINRSWSKTDCKACMHVKRRQ 127 6*************************************9998888888888887777788*************** PP FAR1 73 dgkwevtkleleHnHela 90 dg w v+ + +eHnH+l+ Ote100104750181\|100104750181 128 DGIWTVSFFIKEHNHDLV 145 *************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-22	47	145	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.126	352	388	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.0E-8	352	384	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.4E-7	363	390	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence Send to blast
MRLDENAAVE LLNVNVAAGD GDVETSSRKS SEPHESMEFE SKEEAFKFYK EHALSIGFVA 60 IIKASRRSRV SGKFIDAKFV CTRYGSKPDA TTATENSERA GKKKRGRINR SWSKTDCKAC 120 MHVKRRQDGI WTVSFFIKEH NHDLVVDQTV VRDVKNCKQI KKKKILIPEK LGYVMRQHEN 180 FVSKLYKCIV KSQTAEQFER RWWKLVDRFK LSTDKWIESL HDDRLRWVPV YMKDAVFAGL 240 SSPQRLESVV SLLDKCLLGK TCLKEFLHHY SIMLQERYED EAKAEFDSCH KQPGLKSPSP 300 YGKQMAQIYT NAVFKKFEVE VLGVVACHPK MESKDNATTT FKVHDFEENQ VYQVMWNEET 360 SETSCGCRMF EYNGFLCRHV MIVLQISGVN RIPDKYILRR WTKTAKNREA VGCVETRSER 420 YSDLFQLACK LGDEASLCQE TYKIALAAVG EAFRKCEKIN SSVQTVSDWE LNSPSNYALH 480 ESEELTHGKT KTEEIISAKG KVHLGQGPTT TGLHWNQMGY LSFRTSALDC SYGPKQAERG 540 MT

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence Send to blast

MRLDENAAVE LLNVNVAAGD GDVETSSRKS SEPHESMEFE SKEEAFKFYK EHALSIGFVA  60
IIKASRRSRV SGKFIDAKFV CTRYGSKPDA TTATENSERA GKKKRGRINR SWSKTDCKAC  120
MHVKRRQDGI WTVSFFIKEH NHDLVVDQTV VRDVKNCKQI KKKKILIPEK LGYVMRQHEN  180
FVSKLYKCIV KSQTAEQFER RWWKLVDRFK LSTDKWIESL HDDRLRWVPV YMKDAVFAGL  240
SSPQRLESVV SLLDKCLLGK TCLKEFLHHY SIMLQERYED EAKAEFDSCH KQPGLKSPSP  300
YGKQMAQIYT NAVFKKFEVE VLGVVACHPK MESKDNATTT FKVHDFEENQ VYQVMWNEET  360
SETSCGCRMF EYNGFLCRHV MIVLQISGVN RIPDKYILRR WTKTAKNREA VGCVETRSER  420
YSDLFQLACK LGDEASLCQE TYKIALAAVG EAFRKCEKIN SSVQTVSDWE LNSPSNYALH  480
ESEELTHGKT KTEEIISAKG KVHLGQGPTT TGLHWNQMGY LSFRTSALDC SYGPKQAERG  540
MT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096824.1	1e-167	protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
Refseq	XP_011096826.1	1e-167	protein FAR-RED IMPAIRED RESPONSE 1 isoform X2
Refseq	XP_011096827.1	1e-167	protein FAR-RED IMPAIRED RESPONSE 1 isoform X2
TrEMBL	A0A2G9I7C5	1e-176	A0A2G9I7C5_9LAMI; Uncharacterized protein
STRING	VIT_01s0011g01470.t01	1e-140	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103