PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100102720071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB | ||||||||
Protein Properties | Length: 198aa MW: 22686.2 Da PI: 8.1272 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.8 | 1.4e-09 | 32 | 62 | 18 | 48 |
HTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwqkyl 48 +G g W++ ar g++Rt+k+c++rw++yl Ote100102720071|100102720071 32 NHGEGVWNSLARSAGLKRTGKSCRLRWLNYL 62 69***************************97 PP | |||||||
2 | Myb_DNA-binding | 36.7 | 9.6e-12 | 68 | 107 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l++++++ + W++Ia++++ gRt++++k++w++ Ote100102720071|100102720071 68 RGNITPEEQLLIIELHA----K-WSKIAKHLP-GRTDNEIKNYWRT 107 7899*********9998....5.99*******.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 50 | 2 | 64 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.584 | 10 | 62 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 1.1E-7 | 31 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-14 | 31 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.99E-4 | 33 | 62 | No hit | No description |
SuperFamily | SSF46689 | 2.05E-19 | 48 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.822 | 63 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-8 | 67 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-10 | 68 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-20 | 70 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.57E-11 | 72 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0080086 | Biological Process | stamen filament development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MEKKPCNSQE PEVXXXXXXX XXXXXXXXXX ANHGEGVWNS LARSAGLKRT GKSCRLRWLN 60 YLRPDVRRGN ITPEEQLLII ELHAKWSKIA KHLPGRTDNE IKNYWRTRIQ KHIKQAENVT 120 TPNLDHMNVD QPSYANPALS SCVPTENAVN QSYSTNIATS SFHGSMPNFH GHDFPNQSND 180 HNLWGMDDLW PMQLLNGD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-14 | 33 | 113 | 25 | 108 | B-MYB |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097428.1 | 1e-77 | myb-related protein 305 | ||||
Swissprot | P81391 | 1e-72 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A059PSM5 | 2e-95 | A0A059PSM5_SALMI; MYB-related transcription factor | ||||
STRING | XP_009618404.1 | 5e-74 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Publications ? help Back to Top | |||
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