PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100101960061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | NAC | ||||||||
Protein Properties | Length: 413aa MW: 46432 Da PI: 4.8557 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.1 | 2.1e-33 | 75 | 214 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkr 73 lp+G++F+Ptd+e+++ +L +kv +++ ++++ ++e +i++++P++Lp vk++ + +fF+++ k+y+tg+r Ote100101960061|100101960061 75 LPQGVKFDPTDQEIIW-HLLAKVGNQDvkphpfIDEFIPtVEEEdGICYTHPQNLP-GVKQDGSVSHFFHRAIKAYSTGTR 153 799************5.56677777775665553333333555546**********.677888899*************** PP NAM 74 knratk.....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 k+r+++ + +W++tg++k+v+ +g + g+kk++v+y gr+ k+ekt Wvmh+y+l Ote100101960061|100101960061 154 KRRKIHgddsgDVRWHKTGRTKPVIL-DGVQRGCKKIMVLYisPGRSGKAEKTYWVMHQYHL 214 ***85555544778************.99************777899*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.81E-39 | 60 | 233 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.696 | 75 | 233 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-14 | 76 | 214 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MSGVIGGVFI VPWLLNCLEF MPSWLVDPNR IATKIRSASG ANPREIQWKS NPTKSCPNCH 60 HVMDNSDVPY AWPGLPQGVK FDPTDQEIIW HLLAKVGNQD VKPHPFIDEF IPTVEEEDGI 120 CYTHPQNLPG VKQDGSVSHF FHRAIKAYST GTRKRRKIHG DDSGDVRWHK TGRTKPVILD 180 GVQRGCKKIM VLYISPGRSG KAEKTYWVMH QYHLGTGEDE KEGEYVISKV FYQQQATKQI 240 DKGEEEISEA IHAKVDPVTP KAVTPEPRLE RRSSNCEALQ ASITPTTELE MEREQSNDDD 300 VNNDGGDEEN KWWENESQYL LSSQQLVEGL SLCDEFLQSQ SSPLKGKALL SEYAAGLGAE 360 ELKRDLEECQ NMNMAAAAVD PSNIELDTPP DFRLSQLEFE SQDSYIAWGG SCR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022881992.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
Swissprot | Q6NQK2 | 1e-164 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A4D9A9E4 | 0.0 | A0A4D9A9E4_SALSN; Uncharacterized protein | ||||
STRING | evm.model.supercontig_53.116 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8162 | 24 | 30 |