PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100101050271

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

CO-like

Protein Properties

Length: 377aa MW: 41415 Da PI: 4.7043

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100101050271	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.2	2.5e-06	5	34	6	35
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHk 35 C+ ++e++ + +C+++ lC +C + H+ Ote100101050271\|100101050271 5 CDFCGEQRSIVYCRSDAASLCLSCDRNVHS 34 **************************9995 PP
2	CCT	58.8	1.8e-20	320	363	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a++RYkeK+k RkFeKk+rY++RKa+A+ R RvKGrFvk+ Ote100101050271\|100101050271 320 RSDAVMRYKEKKKIRKFEKKVRYATRKARADVRRRVKGRFVKAG 363 889**************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.158	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	1.7E-6	4	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.00E-6	4	35	No hit	No description
PROSITE profile	PS51017	15.12	320	362	IPR010402	CCT domain
Pfam	PF06203	1.9E-15	320	362	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MGYLCDFCGE QRSIVYCRSD AASLCLSCDR NVHSANALST RHLRTLVCER CNSQPASVRC 60 MEERICRTFS XXXXSFLLDS PSVEDSTCEQ GMCTMSISDN KARDSQGSQD KNNSKDVSLA 120 EASNQRNVDL DKEANWMESL TPLNPKLQNA DLFAGSSSSA THKVYVPREK GIAECEDADF 180 YDDFNVDKID MGIENYGELF GAALDNPDQL FDDEDIDGLF GANDMSGSDC QGAYLAEGSS 240 VGGMNMQPAC SNAASADSVI SCKTEPNLCF MRAISFSGLT GESSGGVDYQ DCGASSMLHM 300 GEPPWSLPGP ESTMPPSSSR SDAVMRYKEK KKIRKFEKKV RYATRKARAD VRRRVKGRFV 360 KAGDAYDYDP LSQSRSY

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MGYLCDFCGE QRSIVYCRSD AASLCLSCDR NVHSANALST RHLRTLVCER CNSQPASVRC  60
MEERICRTFS XXXXSFLLDS PSVEDSTCEQ GMCTMSISDN KARDSQGSQD KNNSKDVSLA  120
EASNQRNVDL DKEANWMESL TPLNPKLQNA DLFAGSSSSA THKVYVPREK GIAECEDADF  180
YDDFNVDKID MGIENYGELF GAALDNPDQL FDDEDIDGLF GANDMSGSDC QGAYLAEGSS  240
VGGMNMQPAC SNAASADSVI SCKTEPNLCF MRAISFSGLT GESSGGVDYQ DCGASSMLHM  300
GEPPWSLPGP ESTMPPSSSR SDAVMRYKEK KKIRKFEKKV RYATRKARAD VRRRVKGRFV  360
KAGDAYDYDP LSQSRSY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100551.1	1e-170	zinc finger protein CONSTANS-LIKE 9
Refseq	XP_011100552.1	1e-170	zinc finger protein CONSTANS-LIKE 9
Refseq	XP_011100553.1	1e-170	zinc finger protein CONSTANS-LIKE 9
Swissprot	Q9SSE5	5e-99	COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBL	A0A068LFB8	0.0	A0A068LFB8_TECGR; CONSTANS-like protein 9
STRING	XP_009601056.1	1e-147	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1270	24	68