PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100100390081

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NF-YA

Protein Properties

Length: 292aa MW: 31563.7 Da PI: 8.8465

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100100390081	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	71.7	1.6e-22	160	205	12	58
CBFB_NFYA 12 qrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++Il+RRq+Rak+e ekkl +ksrkpylheSRh+hA+rR+RgsgGrF Ote100100390081\|100100390081 160 HGILRRRQSRAKAELEKKL-IKSRKPYLHESRHQHAIRRERGSGGRF 205 89***************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	9.1E-23	147	208	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	27.429	148	208	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.4E-15	151	173	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.7E-18	160	205	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.4E-15	182	205	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MQSKSKTVNQ AETYPYSTNS TVCSETWWNN TAYNSFCPRT MRGSASDSSS TEQSGDGQSQ 60 SEGDDTGKHS PNITSFQPDK GYTLEDVHLQ RGEPTLNPRA DGSITQPVQL ELVGHSVAAA 120 SNPYDPYYGG MVAAYGQPMD ATAPGDGTGA CLXXXXXXXH GILRRRQSRA KAELEKKLIK 180 SRKPYLHESR HQHAIRRERG SGGRFAKKSD TDNSKATGSG SSQAGSSSGS EVLAKSSGRK 240 VIGNLQNSNI SNFRKQMNLQ EAECQSHSGQ TGDGPSSQQR ELIQSNHALA MQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-12	160	221	13	74	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090024.1	1e-118	nuclear transcription factor Y subunit A-1 isoform X2
Refseq	XP_011090025.1	1e-118	nuclear transcription factor Y subunit A-1 isoform X2
TrEMBL	A5PGU3	1e-100	A5PGU3_ANTMA; YA4
STRING	Migut.N02320.1.p	2e-94	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3111	22	48