PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100099210011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB | ||||||||
Protein Properties | Length: 236aa MW: 26221 Da PI: 6.7647 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.3 | 5.7e-16 | 14 | 57 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw Ote100099210011|100099210011 14 KGPWTPEEDIILVSYIQEHGSGNWRAVPTNTGLLRCSKSCRLRW 57 79******************************99********** PP | |||||||
2 | Myb_DNA-binding | 25.7 | 2.7e-08 | 56 | 80 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W++Ia++++ Rt++++k++w+++l Ote100099210011|100099210011 56 RWAAIASYLP-ERTDNDIKNYWNTHL 80 4*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-17 | 5 | 57 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.157 | 9 | 84 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.95E-18 | 11 | 76 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-15 | 13 | 82 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 14 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.93E-12 | 16 | 80 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-11 | 58 | 88 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGSGNWRAV PTNTGLLRCS KSCRLRWAAI 60 ASYLPERTDN DIKNYWNTHL KKKLAKSQGG EKGNSSDSNP MSKGQWERRL QTDIHTAKQA 120 LCEALSLDKP VEPNRFPNPV QASTYASSTE NIARXXXXXX XXXXXXXXWM KKSPSEAAVS 180 SDSNSPSEGT LLSSNSESQL VSVETKMPLS LLEKWLLDDA AAQGQEGDFI DMAELF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071639.1 | 7e-99 | myb-related protein 306 | ||||
Swissprot | P81392 | 5e-83 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | A0A059PRE3 | 1e-105 | A0A059PRE3_SALMI; MYB-related transcription factor | ||||
STRING | Migut.I00176.1.p | 1e-85 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Publications ? help Back to Top | |||
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