PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100098830001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 468aa    MW: 52331 Da    PI: 5.9568
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100098830001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS470.68.5e-144484651374
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                   l++lL++cA++v+sg+le+a+ +L ++s+laspdgd+mqR+a+yf eALa r++r+++++yka+++++ s    +ee++al
  Ote100098830001|100098830001  48 LIHLLITCANHVASGSLENANIALDQISHLASPDGDTMQRIASYFSEALADRILRTWPGVYKAFRSTKIS--VLAEEIHAL 126
                                   689*************************************************************999987..6******** PP

                          GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetg 162
                                   k+f+e  P++k+++++ NqaI ea+ege++vH+iD++++++ QW aL++ L++Rpegpp+l+iTg+++    ++e le+t+
  Ote100098830001|100098830001 127 KMFFEFLPFMKVAFVISNQAIIEAMEGEKMVHVIDLNATEPSQWCALIRDLSARPEGPPHLKITGIHP----KREVLEQTA 203
                                   ********************************************************************....9******** PP

                          GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll............................. 214
                                   + L + Ae+l++pf+fn+ v+++ledl++e+Lrvk+gEala+++++qlh+ll                             
  Ote100098830001|100098830001 204 HVLIEEAEKLDLPFQFNP-VVSKLEDLDIEKLRVKTGEALAISSIMQLHSLLasdtgnrspsapmkgigvhlqrvaqmnqg 283
                                   ******************.799*********************************************************** PP

                          GRAS 215 ......................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                                                         ++++s++ ++d  L ++++lsPkv+vv+eq++dhn++s++er++e+l++y+alfd+le+
  Ote100098830001|100098830001 284 tlgellekdmvngyspsndstsSSPLSSSPKIDGYLTALWGLSPKVMVVTEQDSDHNGKSLMERLSESLYFYAALFDCLES 364
                                   ******************9977666677779************************************************** PP

                          GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                                   +lpr+s er k+E++l+g+ei+nv+acegaer++rhe+lekW +r+e+aGF +vpls++a+ qak+ll+ ++ dgy+++e+
  Ote100098830001|100098830001 365 SLPRASIERLKMEKMLFGEEIKNVIACEGAERKQRHEKLEKWTQRFESAGFANVPLSYYAMLQAKRLLQSFNCDGYKIKED 445
                                   ********************************************************************************* PP

                          GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                                   +g++v++W+drpL+svSaWr
  Ote100098830001|100098830001 446 NGCVVICWQDRPLFSVSAWR 465
                                   *******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.31722445IPR005202Transcription factor GRAS
PfamPF035143.0E-14148465IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MFQEDGSSSV TSSPLQMFLT PSSSSSPSLT APYPWLRDLK PEERGLYLIH LLITCANHVA  60
SGSLENANIA LDQISHLASP DGDTMQRIAS YFSEALADRI LRTWPGVYKA FRSTKISVLA  120
EEIHALKMFF EFLPFMKVAF VISNQAIIEA MEGEKMVHVI DLNATEPSQW CALIRDLSAR  180
PEGPPHLKIT GIHPKREVLE QTAHVLIEEA EKLDLPFQFN PVVSKLEDLD IEKLRVKTGE  240
ALAISSIMQL HSLLASDTGN RSPSAPMKGI GVHLQRVAQM NQGTLGELLE KDMVNGYSPS  300
NDSTSSSPLS SSPKIDGYLT ALWGLSPKVM VVTEQDSDHN GKSLMERLSE SLYFYAALFD  360
CLESSLPRAS IERLKMEKML FGEEIKNVIA CEGAERKQRH EKLEKWTQRF ESAGFANVPL  420
SYYAMLQAKR LLQSFNCDGY KIKEDNGCVV ICWQDRPLFS VSAWRNLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-67314641377Protein SCARECROW
5b3h_D6e-67314641377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080382.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A4D9BMD50.0A0A4D9BMD5_SALSN; Uncharacterized protein
STRINGMigut.N02362.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29142453
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]