PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100098830001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | GRAS | ||||||||
Protein Properties | Length: 468aa MW: 52331 Da PI: 5.9568 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 470.6 | 8.5e-144 | 48 | 465 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 l++lL++cA++v+sg+le+a+ +L ++s+laspdgd+mqR+a+yf eALa r++r+++++yka+++++ s +ee++al Ote100098830001|100098830001 48 LIHLLITCANHVASGSLENANIALDQISHLASPDGDTMQRIASYFSEALADRILRTWPGVYKAFRSTKIS--VLAEEIHAL 126 689*************************************************************999987..6******** PP GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetg 162 k+f+e P++k+++++ NqaI ea+ege++vH+iD++++++ QW aL++ L++Rpegpp+l+iTg+++ ++e le+t+ Ote100098830001|100098830001 127 KMFFEFLPFMKVAFVISNQAIIEAMEGEKMVHVIDLNATEPSQWCALIRDLSARPEGPPHLKITGIHP----KREVLEQTA 203 ********************************************************************....9******** PP GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll............................. 214 + L + Ae+l++pf+fn+ v+++ledl++e+Lrvk+gEala+++++qlh+ll Ote100098830001|100098830001 204 HVLIEEAEKLDLPFQFNP-VVSKLEDLDIEKLRVKTGEALAISSIMQLHSLLasdtgnrspsapmkgigvhlqrvaqmnqg 283 ******************.799*********************************************************** PP GRAS 215 ......................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 ++++s++ ++d L ++++lsPkv+vv+eq++dhn++s++er++e+l++y+alfd+le+ Ote100098830001|100098830001 284 tlgellekdmvngyspsndstsSSPLSSSPKIDGYLTALWGLSPKVMVVTEQDSDHNGKSLMERLSESLYFYAALFDCLES 364 ******************9977666677779************************************************** PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354 +lpr+s er k+E++l+g+ei+nv+acegaer++rhe+lekW +r+e+aGF +vpls++a+ qak+ll+ ++ dgy+++e+ Ote100098830001|100098830001 365 SLPRASIERLKMEKMLFGEEIKNVIACEGAERKQRHEKLEKWTQRFESAGFANVPLSYYAMLQAKRLLQSFNCDGYKIKED 445 ********************************************************************************* PP GRAS 355 sgslvlgWkdrpLvsvSaWr 374 +g++v++W+drpL+svSaWr Ote100098830001|100098830001 446 NGCVVICWQDRPLFSVSAWR 465 *******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.317 | 22 | 445 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.0E-141 | 48 | 465 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MFQEDGSSSV TSSPLQMFLT PSSSSSPSLT APYPWLRDLK PEERGLYLIH LLITCANHVA 60 SGSLENANIA LDQISHLASP DGDTMQRIAS YFSEALADRI LRTWPGVYKA FRSTKISVLA 120 EEIHALKMFF EFLPFMKVAF VISNQAIIEA MEGEKMVHVI DLNATEPSQW CALIRDLSAR 180 PEGPPHLKIT GIHPKREVLE QTAHVLIEEA EKLDLPFQFN PVVSKLEDLD IEKLRVKTGE 240 ALAISSIMQL HSLLASDTGN RSPSAPMKGI GVHLQRVAQM NQGTLGELLE KDMVNGYSPS 300 NDSTSSSPLS SSPKIDGYLT ALWGLSPKVM VVTEQDSDHN GKSLMERLSE SLYFYAALFD 360 CLESSLPRAS IERLKMEKML FGEEIKNVIA CEGAERKQRH EKLEKWTQRF ESAGFANVPL 420 SYYAMLQAKR LLQSFNCDGY KIKEDNGCVV ICWQDRPLFS VSAWRNLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 6e-67 | 31 | 464 | 1 | 377 | Protein SCARECROW |
5b3h_D | 6e-67 | 31 | 464 | 1 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080382.1 | 0.0 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A4D9BMD5 | 0.0 | A0A4D9BMD5_SALSN; Uncharacterized protein | ||||
STRING | Migut.N02362.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2914 | 24 | 53 |
Publications ? help Back to Top | |||
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