PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100098470011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | bHLH | ||||||||
Protein Properties | Length: 313aa MW: 35628.2 Da PI: 8.3599 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.6 | 1.9e-12 | 132 | 179 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ ++f L l+P + kK++Ka++L A++Y+k+Lq Ote100098470011|100098470011 132 QDHILAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKYMKQLQ 179 57999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.094 | 129 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-10 | 132 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-17 | 133 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.45E-17 | 133 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.04E-12 | 134 | 183 | No hit | No description |
SMART | SM00353 | 3.1E-15 | 135 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.505 | 243 | 313 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MEISSLRNIS DFGMEIDPLF FHQWCVDPID DYTSLASAFT EGFHQSYTSQ QAPLDFKRPA 60 EAFPVGENRP LKQLKTSNWK NPCKPEKMSS NSYVQPKDEA WCSSTILNFP AESIVCQGIK 120 RVSPNNKISQ AQDHILAERK RREKLSQRFI ALSALVPGLK KMDKASVLGD AIKYMKQLQE 180 KVKTLEEKAK KTTVEXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXASL PEIEARVCDK 240 DVLISIHCEK IKGVLEKIVA EIEKLHLSVV NSSIMTFGDS SLNITIIAQK DEEFGLKMKE 300 LVKNLRDSIK LFM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-14 | 133 | 188 | 8 | 64 | Transcription factor MYC2 |
5gnj_B | 1e-14 | 133 | 188 | 8 | 64 | Transcription factor MYC2 |
5gnj_E | 1e-14 | 133 | 188 | 8 | 64 | Transcription factor MYC2 |
5gnj_F | 1e-14 | 133 | 188 | 8 | 64 | Transcription factor MYC2 |
5gnj_G | 1e-14 | 133 | 188 | 8 | 64 | Transcription factor MYC2 |
5gnj_I | 1e-14 | 133 | 188 | 8 | 64 | Transcription factor MYC2 |
5gnj_M | 1e-14 | 133 | 188 | 8 | 64 | Transcription factor MYC2 |
5gnj_N | 1e-14 | 133 | 188 | 8 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088147.1 | 1e-129 | transcription factor bHLH18-like | ||||
TrEMBL | A0A0H3YBQ3 | 1e-132 | A0A0H3YBQ3_SALMI; Basic helix-loop-helix transcription factor | ||||
STRING | POPTR_0009s08500.1 | 2e-93 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1760 | 24 | 61 |