PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100098470011
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 313aa    MW: 35628.2 Da    PI: 8.3599
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100098470011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-12132179355
                                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   + h  +Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  Ote100098470011|100098470011 132 QDHILAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKYMKQLQ 179
                                   57999***********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.094129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-10132179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-17133192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-17133194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-12134183No hitNo description
SMARTSM003533.1E-15135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.505243313IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEISSLRNIS DFGMEIDPLF FHQWCVDPID DYTSLASAFT EGFHQSYTSQ QAPLDFKRPA  60
EAFPVGENRP LKQLKTSNWK NPCKPEKMSS NSYVQPKDEA WCSSTILNFP AESIVCQGIK  120
RVSPNNKISQ AQDHILAERK RREKLSQRFI ALSALVPGLK KMDKASVLGD AIKYMKQLQE  180
KVKTLEEKAK KTTVEXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXASL PEIEARVCDK  240
DVLISIHCEK IKGVLEKIVA EIEKLHLSVV NSSIMTFGDS SLNITIIAQK DEEFGLKMKE  300
LVKNLRDSIK LFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14133188864Transcription factor MYC2
5gnj_B1e-14133188864Transcription factor MYC2
5gnj_E1e-14133188864Transcription factor MYC2
5gnj_F1e-14133188864Transcription factor MYC2
5gnj_G1e-14133188864Transcription factor MYC2
5gnj_I1e-14133188864Transcription factor MYC2
5gnj_M1e-14133188864Transcription factor MYC2
5gnj_N1e-14133188864Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088147.11e-129transcription factor bHLH18-like
TrEMBLA0A0H3YBQ31e-132A0A0H3YBQ3_SALMI; Basic helix-loop-helix transcription factor
STRINGPOPTR_0009s08500.12e-93(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461