PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100098110081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family AP2
Protein Properties Length: 774aa    MW: 87850.8 Da    PI: 9.5682
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100098110081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.41.3e-1158114155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+++GV++++++gr++A+++d  s+n   k+k  + g ++ +e Aa+a++ a++k++g
  Ote100098110081|100098110081  58 SKFRGVSRHRWTGRYEAHLWDkLSWNItqKKKGKQ-GAYDDEEAAARAYDLAALKYWG 114
                                   79*******************88887784446666.99***9**************98 PP
2AP251.13.3e-16157208155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Ote100098110081|100098110081 157 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 208
                                   89****99**********99966...3.6*************************97 PP
3AP248.42.2e-15471530155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+++GV+++k++gr++A+++d  ++n    k+ k+++lg ++ +e Aa+a++ a++k++g
  Ote100098110081|100098110081 471 SRFRGVSRHKWTGRYEAHLWDkLTWNVtqkKKgKQVYLGAYDDEEAAARAYDLAALKYWG 530
                                   789******************877755555447*************************98 PP
4AP254.23.5e-17573624155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV +++++grW+A+I   +   g +k+ +lg++gt+eeAa+a++ a+ +++g
  Ote100098110081|100098110081 573 SIYRGVARHHQNGRWEARIGRvF---G-NKYLYLGTYGTEEEAARAYDIAAIEYRG 624
                                   57****************99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-858114IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-1458124IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.7E-1259123IPR001471AP2/ERF domain
SMARTSM003809.3E-1859128IPR001471AP2/ERF domain
PROSITE profilePS5103218.13659122IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-17157218IPR016177DNA-binding domain
PfamPF008471.2E-11157208IPR001471AP2/ERF domain
CDDcd000184.93E-24157218No hitNo description
Gene3DG3DSA:3.30.730.108.1E-18158217IPR001471AP2/ERF domain
PROSITE profilePS5103218.953158216IPR001471AP2/ERF domain
SMARTSM003802.6E-26158222IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-16471540IPR016177DNA-binding domain
PfamPF008478.0E-12471530IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-14472539IPR001471AP2/ERF domain
PROSITE profilePS5103219.796472538IPR001471AP2/ERF domain
SMARTSM003802.5E-25472544IPR001471AP2/ERF domain
PRINTSPR003678.3E-5473484IPR001471AP2/ERF domain
PfamPF008472.6E-12573624IPR001471AP2/ERF domain
CDDcd000181.39E-23573634No hitNo description
SuperFamilySSF541711.24E-17573634IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.2E-17574633IPR001471AP2/ERF domain
PROSITE profilePS5103218.848574632IPR001471AP2/ERF domain
SMARTSM003806.8E-26574638IPR001471AP2/ERF domain
PRINTSPR003678.3E-5614634IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MAMRMIKSEG NLQVSMADET TRVKRRRREA AAAAIDDEQG VKQEGRAMPA PTTVKRSSKF  60
RGVSRHRWTG RYEAHLWDKL SWNITQKKKG KQGAYDDEEA AARAYDLAAL KYWGTSTFTN  120
FPISDYEAEI GIMQTMTKEE YLASLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG  180
NKYLYLGTYS TQEEAARAYD IAAIEYRGIN AVTNFDLSNY IRWLKPGTNS SIPDQDMKTG  240
IELPPLIPSP FLEREESPSP YLKRKAFSAE DLQESFSCKA PISPCSKPSP TALSLLFRSS  300
LFRELLEKNS NVSEEENTKD ETRVGSDDEY RGMFTKGSED VNIPFVVSSN GHSVELQGQL  360
NLEYPSTGTI SCLKFKQLHW NHLRFCPRTL PGQEIASNRT FARLEMEMVM SESDMYRKRQ  420
YSCMVESAAP ALKCVKRRRR GVNVSVLGST QLLQQHEGDS NSSPKTVKRS SRFRGVSRHK  480
WTGRYEAHLW DKLTWNVTQK KKGKQVYLGA YDDEEAAARA YDLAALKYWG TSTFTNFPIS  540
DYEKELQIML TATKEEYLAS LRRKSSGFSR GASIYRGVAR HHQNGRWEAR IGRVFGNKYL  600
YLGTYGTEEE AARAYDIAAI EYRGINAVTN FDLSSYIRWL KPRGRNSVPL QELRAITESQ  660
EELSPLSLGK KMCSSTKLYG TNAASMLETF ERSTPFGLSR NASSPTALGL LLRSSLFKEL  720
VEKNSNAEEE ESDDEKPSNL QQACYNNEGG FMFYNIPFSV ASNNHWIELQ GTPS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098579.11e-178AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A4D9B4480.0A0A4D9B448_SALSN; AP2-like factor, ANT lineage
STRINGMigut.H00893.1.p1e-160(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34402145