PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100098020061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 269aa    MW: 30485.8 Da    PI: 7.429
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100098020061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding331.4e-104986139
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39
                                  rg W + Ed +l+++v+++G+ +W++Ia+++  gR++ +
  Ote100098020061|100098020061 49 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGIH 86
                                  899*****************************.**9865 PP
2Myb_DNA-binding30.77.5e-101091341946
                                   TTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding  19 lGggtWktIartmgkgRtlkqcksrwqk 46 
                                   +G++ W+ Iar ++ gRt++ +k++w+ 
  Ote100098020061|100098020061 109 YGNK-WAMIARLFP-GRTDNAVKNHWHV 134
                                   9***.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.12444140IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-104784IPR009057Homeodomain-like
SMARTSM007171.8E-1048138IPR001005SANT/Myb domain
SuperFamilySSF466896.74E-1649136IPR009057Homeodomain-like
PfamPF002493.2E-94984IPR001005SANT/Myb domain
CDDcd001677.17E-652133No hitNo description
Gene3DG3DSA:1.10.10.604.0E-10108134IPR009057Homeodomain-like
PfamPF002492.1E-6109133IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MVFADDWVFP FPDEGNNSDG FGENINLNAS ANEEDQDYAR SAQSKLCGRG HWRPAEDSKL  60
KELVALYGPQ NWNLIAEKLE GRSGIHGGGG GKXXXXXXXX XXXXXXXXYG NKWAMIARLF  120
PGRTDNAVKN HWHVIMARKY REQSTAYRRR KMGHFVFKRP EDDVDAGGRI TIRNGDGFWT  180
TQASLAFYPG PSYGNEMSIL NQKKFWEETS YSSSYPHRHH DYASAMQQHT VYHFPSKPHE  240
AETSGNIEAN SEKGMAPRFI DFLGVGSSL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075638.11e-82myb-like protein Q
TrEMBLA0A059PSU64e-97A0A059PSU6_SALMI; MYB-related transcription factor
STRINGMigut.E00083.1.p2e-65(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470