PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100096990031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NAC
Protein Properties Length: 300aa    MW: 33519 Da    PI: 6.3662
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100096990031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.51.6e-50111361128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   lp+GfrFhP+deel+++yL k ++g++++l   + +vd++k+ePwd+p+ +  + k+wyf+s+rd+kyatg r+nrat sg
  Ote100096990031|100096990031  11 LPAGFRFHPRDEELICDYLFKWISGEPHPL-PLLIQVDLNKCEPWDIPAFACVGGKDWYFYSQRDRKYATGLRTNRATISG 90 
                                   799************************999.77999************65556899************************* PP

                           NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   yWkatgkd+++++ kg lvg++ktLvfy+grapkg+ktdWvmhe+rl
  Ote100096990031|100096990031  91 YWKATGKDRAIFR-KGVLVGMRKTLVFYQGRAPKGRKTDWVMHEFRL 136
                                   *************.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-615159IPR003441NAC domain
PROSITE profilePS5100555.0311159IPR003441NAC domain
PfamPF023655.9E-2512136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MSSLSEVEAK LPAGFRFHPR DEELICDYLF KWISGEPHPL PLLIQVDLNK CEPWDIPAFA  60
CVGGKDWYFY SQRDRKYATG LRTNRATISG YWKATGKDRA IFRKGVLVGM RKTLVFYQGR  120
APKGRKTDWV MHEFRLDGPG PKSISPAKED WVLCRVFFKS KSEMAGKSQE EGSSYDVASP  180
SPSSLPPLTD PLFAFNDEYH EQVPCFSILN TNPNFPLLDQ MEPPLQMPPA ASDLDGYGFP  240
ASTVNGPSSY DKKMMKAVLS HLTKMENGGN DEISVKGGSP SFGEGSSDSY LSEVVWNNFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-50716213168NO APICAL MERISTEM PROTEIN
1ut4_B7e-50716213168NO APICAL MERISTEM PROTEIN
1ut7_A7e-50716213168NO APICAL MERISTEM PROTEIN
1ut7_B7e-50716213168NO APICAL MERISTEM PROTEIN
4dul_A7e-50716213168NAC domain-containing protein 19
4dul_B7e-50716213168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095676.11e-128NAC domain-containing protein 21/22-like
SwissprotQ84TE61e-102NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A2G9I9R71e-127A0A2G9I9R7_9LAMI; Uncharacterized protein
STRINGMigut.M01566.1.p1e-124(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]