PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100096920011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bZIP

Protein Properties

Length: 432aa MW: 48022 Da PI: 7.478

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100096920011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.2	1.1e-10	127	169	4	46
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k rr+++NReAAr+sR+RKka++++Le +L++ ++L+ Ote100096920011\|100096920011 127 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRMKLTQLEQDLQ 169 6889*************************99888888777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.7E-6	124	189	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.278	126	170	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.0E-8	127	169	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.07E-7	128	171	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.4E-8	129	172	No hit	No description
PROSITE pattern	PS00036	0	131	146	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.9E-30	209	284	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
NQAGAAAFDF GELEEAIILQ GVNINDHDRK QPLYRPAATL EMFPSWPMRF HQPTTRGSSR 60 SGEESTDSVS ATKNTPSNGH RQPPPPQMDA AGGIHSPTIS ASSQPAANST PEKRRGPGSN 120 SDKMLDAKTL RRLAQNREAA RKSRLRKKAY VQQLESSRMK LTQLEQDLQR ARSQGLLLGG 180 GGVASRSISS GGAIFDVEYA RWLDDDQRHM SQIRTALQAN LSDGDLRLIM DGYITHYDEI 240 FHLKGVAAKS DVFHLITGMW TTPAERCFLW MGGFRPSDLI KMLMVQLDPL TEQQIMGICS 300 LQHSSQQAEE ALSQGLEQLH QSLVDTIANC SVNDGTHHMA VALGKMANLE SFVQQADNLR 360 QQTLHNLHRL LTIRQAARCV LVIGEYYSRL RAVSSLWSSR PIESLIADDY SSQTRTELQM 420 VQFSHSQPFS DN

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

NQAGAAAFDF GELEEAIILQ GVNINDHDRK QPLYRPAATL EMFPSWPMRF HQPTTRGSSR  60
SGEESTDSVS ATKNTPSNGH RQPPPPQMDA AGGIHSPTIS ASSQPAANST PEKRRGPGSN  120
SDKMLDAKTL RRLAQNREAA RKSRLRKKAY VQQLESSRMK LTQLEQDLQR ARSQGLLLGG  180
GGVASRSISS GGAIFDVEYA RWLDDDQRHM SQIRTALQAN LSDGDLRLIM DGYITHYDEI  240
FHLKGVAAKS DVFHLITGMW TTPAERCFLW MGGFRPSDLI KMLMVQLDPL TEQQIMGICS  300
LQHSSQQAEE ALSQGLEQLH QSLVDTIANC SVNDGTHHMA VALGKMANLE SFVQQADNLR  360
QQTLHNLHRL LTIRQAARCV LVIGEYYSRL RAVSSLWSSR PIESLIADDY SSQTRTELQM  420
VQFSHSQPFS DN

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088884.1	0.0	transcription factor TGA9 isoform X2
Refseq	XP_020552198.1	0.0	transcription factor TGA9 isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A4D8ZWL6	0.0	A0A4D8ZWL6_SALSN; Transcription factor TGA
STRING	Gorai.006G111800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3683	23	40

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]