PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100096920001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bZIP

Protein Properties

Length: 452aa MW: 50266.6 Da PI: 7.562

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100096920001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.1	1.2e-10	147	189	4	46
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k rr+++NReAAr+sR+RKka++++Le +L++ ++L+ Ote100096920001\|100096920001 147 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRMKLTQLEQDLQ 189 6889*************************99888888777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.7E-6	144	209	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.278	146	190	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.4E-8	147	189	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.55E-7	148	191	No hit	No description
CDD	cd14708	5.80E-21	148	194	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.8E-8	149	192	No hit	No description
PROSITE pattern	PS00036	0	151	166	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.2E-30	229	304	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MGMPTHTAFS DSGASHMLHH PNLRAAAFDF GELEEAIILQ GVNINDHDRK QPLYRPAATL 60 EMFPSWPMRF HQPTTRGSSR SGEESTDSVS ATKNTPSNGH RQPPPPQMDA AGGIHSPTIS 120 ASSQPAANST PEKRRGPGSN SDKMLDAKTL RRLAQNREAA RKSRLRKKAY VQQLESSRMK 180 LTQLEQDLQR ARSQGLLLGG GGVASRSISS GGAIFDVEYA RWLDDDQRHM SQIRTALQAN 240 LSDGDLRLIM DGYITHYDEI FHLKGVAAKS DVFHLITGMW TTPAERCFLW MGGFRPSDLI 300 KMLMVQLDPL TEQQIMGICS LQHSSQQAEE ALSQGLEQLH QSLVDTIANC SVNDGTHHMA 360 VALGKMANLE SFVQQADNLR QQTLHNLHRL LTIRQAARCV LVIGEYYSRL RAVSSLWSSR 420 PIESLIADDY SSQTRTELQM VQFSHSQPFS DN

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MGMPTHTAFS DSGASHMLHH PNLRAAAFDF GELEEAIILQ GVNINDHDRK QPLYRPAATL  60
EMFPSWPMRF HQPTTRGSSR SGEESTDSVS ATKNTPSNGH RQPPPPQMDA AGGIHSPTIS  120
ASSQPAANST PEKRRGPGSN SDKMLDAKTL RRLAQNREAA RKSRLRKKAY VQQLESSRMK  180
LTQLEQDLQR ARSQGLLLGG GGVASRSISS GGAIFDVEYA RWLDDDQRHM SQIRTALQAN  240
LSDGDLRLIM DGYITHYDEI FHLKGVAAKS DVFHLITGMW TTPAERCFLW MGGFRPSDLI  300
KMLMVQLDPL TEQQIMGICS LQHSSQQAEE ALSQGLEQLH QSLVDTIANC SVNDGTHHMA  360
VALGKMANLE SFVQQADNLR QQTLHNLHRL LTIRQAARCV LVIGEYYSRL RAVSSLWSSR  420
PIESLIADDY SSQTRTELQM VQFSHSQPFS DN

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088884.1	0.0	transcription factor TGA9 isoform X2
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A4D8ZWL6	0.0	A0A4D8ZWL6_SALSN; Transcription factor TGA
STRING	Gorai.006G111800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3683	23	40

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]