PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100096710011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family AP2
Protein Properties Length: 329aa    MW: 37311.4 Da    PI: 9.5257
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100096710011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.86.2e-1456115155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +  Aa+ ++ a++k++g
  Ote100096710011|100096710011  56 SIYRGVTRHRWTGRYEAHLWDkNCWNEaqnKKgRQVYLGAYDDEAAAARSYDLAALKYWG 115
                                   57*******************999966655446**********99*************98 PP
2AP252.41.3e-16158209155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Ote100096710011|100096710011 158 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDMAAIEYRG 209
                                   89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.10E-1856125No hitNo description
PfamPF008472.4E-1056115IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1656125IPR016177DNA-binding domain
PROSITE profilePS5103219.7357123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-1457124IPR001471AP2/ERF domain
SMARTSM003803.1E-2557129IPR001471AP2/ERF domain
PRINTSPR003676.0E-65869IPR001471AP2/ERF domain
CDDcd000186.71E-23158219No hitNo description
SuperFamilySSF541718.5E-18158219IPR016177DNA-binding domain
PfamPF008474.0E-12158209IPR001471AP2/ERF domain
PROSITE profilePS5103218.083159217IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17159218IPR001471AP2/ERF domain
SMARTSM003801.8E-24159223IPR001471AP2/ERF domain
PRINTSPR003676.0E-6199219IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAKLSSLHQN SNNNNNNNNT ATTSSNIVVN GANPVMMKPK RTRKTIPRDS PPQRSSIYRG  60
VTRHRWTGRY EAHLWDKNCW NEAQNKKGRQ VYLGAYDDEA AAARSYDLAA LKYWGRETIL  120
NFPVSTYEKE IIEMEAQSRE EYIGSLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF  180
GNKYLYLGTY ATQEEAAIAY DMAAIEYRGL NAVTNFNLSR YIKWLKPNST STSGNDSNAA  240
ASCSASQQPA SVSRPATSAL GLLLQSSKFK ELMEMNDQLA AADCPSNSXX XXXXXXXIPP  300
PQEYHEKPSF DFCNIHEDIF ADFMHFHYQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547685.11e-146AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-103AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A4D9A7A31e-158A0A4D9A7A3_SALSN; AP2-like factor, ANT lineage
STRINGGorai.009G008800.11e-143(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]