PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100095980041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 318aa    MW: 35321 Da    PI: 8.9298
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100095980041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.23.9e-1367111147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qk+
  Ote100095980041|100095980041  67 RESWTEMEHDKFLEALHLFDRD-WKKIEAFVG-SKTVIQIRSHAQKH 111
                                   789*****************77.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.01E-1561117IPR009057Homeodomain-like
PROSITE profilePS5129413.84962116IPR017930Myb domain
TIGRFAMsTIGR015571.6E-1565114IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.4E-566107IPR009057Homeodomain-like
SMARTSM007178.6E-1166114IPR001005SANT/Myb domain
PfamPF002491.4E-1067111IPR001005SANT/Myb domain
CDDcd001671.89E-869112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MVSVHPNPPP GQGFTRFYNS YFGGDPMSTP STKKTENNMT ASYMSTGPGV EDPSKKVRKP  60
YTITKSRESW TEMEHDKFLE ALHLFDRDWK KIEAFVGSKT VIQIRSHAQK HFMKVQKNGI  120
SEHVPPPRPK RKAAHPYPHK APKKDAVASQ LSRPSSSVSL LNPKYAGGPQ SMSAPRNVTS  180
SEPLYPWACT VPPGCVSPMS GDDFTLSDGD MMHNGSSNIA SHLWDSNGTN SQVTEGLIGT  240
REALPDFAQV YSFIGSLFDP SSSDHLEKLK KMDPINIETV LMLMKNLSVN LVSPEFEDHR  300
KLLSLYDVDI RKDSLTTP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022857258.11e-122protein REVEILLE 6-like isoform X1
SwissprotQ8H0W32e-86RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A4D9AX471e-145A0A4D9AX47_SALSN; Uncharacterized protein
STRINGPOPTR_0014s08520.11e-107(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]