PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100095590041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 194aa    MW: 22125.6 Da    PI: 9.6727
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100095590041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.21.2e-26849243
                                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SS CS
                          WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversae 43
                                  +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers++
  Ote100095590041|100095590041  8 NDGYNWRKYGQKQVKGSEYPRSYYKCTHSDCPVKKKVERSRH 49
                                  8**************************************985 PP
2WRKY1061.9e-3399156158
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                                   ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+a+d k+v++tYeg+Hnh
  Ote100095590041|100095590041  99 LDDGYRWRKYGQKVVKGNPYPRSYYKCTNQGCNVRKHVERAASDAKAVITTYEGKHNH 156
                                   59******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.84249IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-22450IPR003657WRKY domain
SuperFamilySSF1182901.83E-21550IPR003657WRKY domain
SMARTSM007743.7E-22762IPR003657WRKY domain
PfamPF031063.1E-20849IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-3784159IPR003657WRKY domain
SuperFamilySSF1182906.41E-3091159IPR003657WRKY domain
PROSITE profilePS5081137.89594159IPR003657WRKY domain
SMARTSM007744.2E-3999158IPR003657WRKY domain
PfamPF031062.8E-26100156IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MAVDKPANDG YNWRKYGQKQ VKGSEYPRSY YKCTHSDCPV KKKVERSRHG STDSEEADED  60
EPESKKRRSE VHASEQALSH RTVTEPRIIV QTTSEVDLLD DGYRWRKYGQ KVVKGNPYPR  120
SYYKCTNQGC NVRKHVERAA SDAKAVITTY EGKHNHGVPA AKTSSHATAN ALSQRQMANE  180
RPPVGLHFKE ERMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-428160878Probable WRKY transcription factor 4
2lex_A9e-428160878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022887540.17e-92probable WRKY transcription factor 3
SwissprotQ93WU71e-69WRK58_ARATH; Probable WRKY transcription factor 58
TrEMBLA0A022Q3284e-89A0A022Q328_ERYGU; Uncharacterized protein
TrEMBLA0A2N9J5T84e-89A0A2N9J5T8_FAGSY; Uncharacterized protein
STRINGMigut.E00066.1.p5e-90(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41072445
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]