PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100095340191 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | bHLH | ||||||||
Protein Properties | Length: 369aa MW: 40868.4 Da PI: 8.4656 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.2 | 1.2e-12 | 305 | 350 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +AveYIk Lq Ote100095340191|100095340191 305 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKALQ 350 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.091 | 299 | 349 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-15 | 302 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.63E-12 | 303 | 352 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-13 | 304 | 358 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-12 | 305 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-9 | 305 | 350 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MYGDSHALST DSSPIFPPNP KREQEQQLQF MESDYRQQFG CNNSSQNSSG LLRLRSAPTS 60 LLSNLTERSS KLGFSRFCSD ETNGMDAAEN DRCNEGSGNR FGGMNSQLPP QYPRQGRAQM 120 GYTVVSSIGR ENQGIGANLM RQNSSPAGFL SHLNSQNGYS GIGSYRVADG GGDLSPSWSR 180 FKNHTNLSRI SEVENENGGP NGLDEPKVGD SSANNLFLSS GFPFGSWNDS SYFAENIKRE 240 VDNDPKLFLN AESGNRPNTN MMLSHHLSLP KTSSEMAAVE KLLQLQDTVP CKVRAKRGCA 300 THPRSIAERV RRTRISERMR KLQELVPNMD KQTNTADMLD LAVEYIKALQ KQYKVLNDIR 360 ANCKCSAFP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00308 | DAP | Transfer from AT2G42280 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011075183.1 | 1e-151 | transcription factor bHLH130-like | ||||
Swissprot | Q66GR3 | 1e-81 | BH130_ARATH; Transcription factor bHLH130 | ||||
TrEMBL | A0A0H3Y8U7 | 0.0 | A0A0H3Y8U7_SALMI; Basic helix-loop-helix transcription factor | ||||
STRING | XP_009768432.1 | 1e-112 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5194 | 24 | 37 |
Publications ? help Back to Top | |||
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