PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100095340191
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 369aa    MW: 40868.4 Da    PI: 8.4656
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100095340191genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-12305350655
                                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk Lq
  Ote100095340191|100095340191 305 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKALQ 350
                                   689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.091299349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-15302359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.63E-12303352No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13304358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-12305355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9305350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MYGDSHALST DSSPIFPPNP KREQEQQLQF MESDYRQQFG CNNSSQNSSG LLRLRSAPTS  60
LLSNLTERSS KLGFSRFCSD ETNGMDAAEN DRCNEGSGNR FGGMNSQLPP QYPRQGRAQM  120
GYTVVSSIGR ENQGIGANLM RQNSSPAGFL SHLNSQNGYS GIGSYRVADG GGDLSPSWSR  180
FKNHTNLSRI SEVENENGGP NGLDEPKVGD SSANNLFLSS GFPFGSWNDS SYFAENIKRE  240
VDNDPKLFLN AESGNRPNTN MMLSHHLSLP KTSSEMAAVE KLLQLQDTVP CKVRAKRGCA  300
THPRSIAERV RRTRISERMR KLQELVPNMD KQTNTADMLD LAVEYIKALQ KQYKVLNDIR  360
ANCKCSAFP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075183.11e-151transcription factor bHLH130-like
SwissprotQ66GR31e-81BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A0H3Y8U70.0A0A0H3Y8U7_SALMI; Basic helix-loop-helix transcription factor
STRINGXP_009768432.11e-112(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51942437
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]