PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100094920121
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family FAR1
Protein Properties Length: 481aa    MW: 54352.5 Da    PI: 8.8362
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100094920121genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.71.5e-2631116291
                          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle 82 
                                   +Y+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++     ++r++ ++gCka+++vk++ +gkw++++++
  Ote100094920121|100094920121  31 YYKEYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRPNGKWYIHSFV 107
                                   8***************************************999877....9****************************** PP

                          FAR1  83 leHnHelap 91 
                                   +eHnHel p
  Ote100094920121|100094920121 108 KEHNHELLP 116
                                   ******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-2431116IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.608259295IPR007527Zinc finger, SWIM-type
PfamPF044342.8E-9262293IPR007527Zinc finger, SWIM-type
SMARTSM005751.8E-6270297IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MEASSSSVLV NSNLESGDDS EFDTHEAAYT YYKEYAKSVG FGTAKLSSRR SRASKEFIDA  60
KFSCIRYGNK QQSDDAINPR PSPKIGCKAS MHVKRRPNGK WYIHSFVKEH NHELLPAQAH  120
FFRSHRNADS VNNDTKVRKK KVPASGLKQY GAYKFSGSCM ENVMRNQHDR GRFLRKYEYI  180
LEDRYEEEAK ANFDAWHETP ELKSPSPFEK QMLLVYSHEI FRKFQMEVLG AAACHLKKEN  240
EDGTTVIYGV KDFENNLDYL VEWNEQKSDV YCSCRSFQYK GYLCRHCIVV LQMSGVFSIP  300
FKYILQRWTN AATSRIPLSE KLEEVQAKVR RYDDLCRRAI ILGEEGSLSA ESYNNAVASI  360
NEALKKCTNV NPLSDQNDLR PNVSAPLAIL GAAGVDHNAT ITFGQQVPMA KMIDTSKGSK  420
RTNSGKEAAG NGGMTGKKGK DMPAPLDYPS LYPRFLTTLL KGGEMSKRGV EMLGEMLEEQ  480
S
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072522.11e-169protein FAR1-RELATED SEQUENCE 4
RefseqXP_011072523.11e-169protein FAR1-RELATED SEQUENCE 4
SwissprotQ6NQJ72e-95FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBLA0A2H5NMJ70.0A0A2H5NMJ7_CITUN; Uncharacterized protein
STRINGMigut.I01028.1.p1e-161(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49621103
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]