PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100094190111
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ARF
Protein Properties Length: 901aa    MW: 99526.4 Da    PI: 6.7971
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100094190111genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.51.4e-24140241199
                                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                   f+k+lt sd++++g +++p++ ae+        + +++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L
  Ote100094190111|100094190111 140 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQTPPA--QELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRL 218
                                   99****************************97544444..48*************************************** PP

                                   -TT-EEEEEE-SSSEE..EEEEE-S CS
                            B3  75 kegDfvvFkldgrsefelvvkvfrk 99 
                                    +gD+v+F   ++++ +l+++++r+
  Ote100094190111|100094190111 219 VAGDSVIFI--WNENNQLLLGIRRA 241
                                   *********..7888889****997 PP
2Auxin_resp120.31.4e-39266349183
                    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWr 80 
                                   aahaa+t+s F+++YnPras+seFv++++k+ k+++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wr
  Ote100094190111|100094190111 266 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKSVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWR 346
                                   79*********************************9789****************************************** PP

                    Auxin_resp  81 sLk 83 
                                   s+k
  Ote100094190111|100094190111 347 SVK 349
                                   985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.36E-49125269IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-43133255IPR015300DNA-binding pseudobarrel domain
CDDcd100178.33E-23139240No hitNo description
PROSITE profilePS5086313.296140242IPR003340B3 DNA binding domain
SMARTSM010197.0E-26140242IPR003340B3 DNA binding domain
PfamPF023626.8E-23140241IPR003340B3 DNA binding domain
PfamPF065074.0E-34266349IPR010525Auxin response factor
SuperFamilySSF542775.89E-7762840No hitNo description
PROSITE profilePS5174523.109766850IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 901 aa     Download sequence    Send to blast
MRLSSSSSTS PGFNAXXXXX SRRKLAGEKK CLNSELWHAC AGPLVSLPQL GSRVVYFPQG  60
HSEQVAASTN KEVDGAIPNY PGLQPQLICQ LHNVTMHADV ETDEVYAQMT LQPLTPQEQK  120
DICLLPSELG TPSKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD YSQTPPAQEL  180
IAKDLHGNEW KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDSVIFIWNE NNQLLLGIRR  240
ANRPQTVMPS SVLSSDSMHI GLLAAAAHAA ATNSRFTIFY NPRASPSEFV IPLAKYAKSV  300
YHTRVSVGMR FRMLFETEES SVRRYMGTIT GISDLDPVRW QNSHWRSVKV GWDESTAGER  360
QPRVSLWEIE PLTTFPMYPS PFSLRLKRPW PSGLPSFPGL KDGDMGMNSP MTWLRGGIGH  420
QGVQALNFQG LGVSPWMQPR LDNSTFCLQP DIYQVMAAAA LQDPGSLDHS KLSNQSLLQF  480
QQNVSNVSAS LLNNQLLQQP HSQLSFMQNL PENNVISQAQ ILHQQLQGRQ HLINQQQPQQ  540
LNPQFQDQQI KKSIPTSLQI GSASESQFTP VQALSSTSQL QNFSDLIGNH MASSNNSSMQ  600
SLLSSFSREG VSPVVNLNGP HPLVSQSSSK RVALDPQLPS KASQFGVPHL DELVTPNSKV  660
SDLSALLPPF NGKEFSEFHG GAHSQDNLLF GVSNDSSANM LNDMSNHRNS GSENESLSMP  720
YANPVYTSGA GPEFPLNSDM TTSSCVDESG YMQSSENGDH TNPTPGAFVK VHKSGSFGRS  780
LDISKFSSYP ELRSELARMF GLEGLLEDPQ RSGWQLVFVD RENDILLLGD DPWQEFVNNV  840
WYIKILSPVE VQHMGKDGLD LPNSVQNHRL STSSNSCDDY MSRKDSRGNL NGIPSVGSLE  900
Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1582837047388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022850416.10.0auxin response factor 17-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A4D9AEL00.0A0A4D9AEL0_SALSN; Uncharacterized protein
STRINGXP_009757615.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]