PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100093940021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HD-ZIP

Protein Properties

Length: 403aa MW: 45073.5 Da PI: 8.9712

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100093940021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.3	3e-19	26	84	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Ote100093940021\|100093940021 26 KYVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 84 5679*****************************************************97 PP
2	START	178.9	2.9e-56	171	379	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetl 82 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W +++++++++ Ote100093940021\|100093940021 171 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDMV 250 7899****************************************************.8888888888******** PP EEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEE CS START 83 evissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepk 157 +v+ ++ g+++l +++l+a+++l+p Rdf+ +Ry+ + +g++v++++S++++q+ p+ +++vRae+lpSg+li+p+ Ote100093940021\|100093940021 251 NVLPTAngGTIELLYMQLYAPTTLAPgRDFWLLRYTSVMDDGSLVVCERSLSNTQNGPSmppVPNFVRAEMLPSGYLIRPC 331 9999*********************************************999999************** PP CTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 158 snghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 ++g+s +++v+h++l++++++++lr+l++s+++ ++++++a+l+++++ Ote100093940021\|100093940021 332 EGGGSIIHIVDHMNLEAWSVPEVLRPLYESSTVLAQRITTAALRQLRQ 379 ******************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.985	21	85	IPR001356	Homeobox domain
SMART	SM00389	6.7E-16	23	89	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.28E-17	24	89	IPR009057	Homeodomain-like
CDD	cd00086	2.61E-16	26	86	No hit	No description
Pfam	PF00046	8.1E-17	27	84	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.7E-19	28	84	IPR009057	Homeodomain-like
CDD	cd14686	4.79E-6	78	117	No hit	No description
PROSITE profile	PS50848	25.853	161	389	IPR002913	START domain
CDD	cd08875	1.76E-79	165	381	No hit	No description
Gene3D	G3DSA:3.30.530.20	1.3E-23	170	365	IPR023393	START-like domain
SMART	SM00234	1.8E-40	170	380	IPR002913	START domain
SuperFamily	SSF55961	2.2E-38	170	381	No hit	No description
Pfam	PF01852	4.3E-54	171	379	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MAISCKXXXX XXXXXXXXXX XXXNGKYVRY TPEQVEALER LYHDCPKPSS MRRQQLIREC 60 PILSNIEPKQ IKVWFQNRRC REKQRKEASR LQAVNRKLTA MNKLLMEEND RLQKQVSQLV 120 YENSHFRQQT PNNALSAKDT SCDSVVTSGQ KHHLTPQHPP RDASPAGLLS IAEETLAEFL 180 SKATGTAVEW VQMPGMKPGP DSIGIVAISH GCTGVAARAC GLVGLEPTRV AEILKDRPSW 240 FRDCRAVDMV NVLPTANGGT IELLYMQLYA PTTLAPGRDF WLLRYTSVMD DGSLVVCERS 300 LSNTQNGPSM PPVPNFVRAE MLPSGYLIRP CEGGGSIIHI VDHMNLEAWS VPEVLRPLYE 360 SSTVLAQRIT TAALRQLRQI AQDISQSSVN NWGRRPAALR ALS

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MAISCKXXXX XXXXXXXXXX XXXNGKYVRY TPEQVEALER LYHDCPKPSS MRRQQLIREC  60
PILSNIEPKQ IKVWFQNRRC REKQRKEASR LQAVNRKLTA MNKLLMEEND RLQKQVSQLV  120
YENSHFRQQT PNNALSAKDT SCDSVVTSGQ KHHLTPQHPP RDASPAGLLS IAEETLAEFL  180
SKATGTAVEW VQMPGMKPGP DSIGIVAISH GCTGVAARAC GLVGLEPTRV AEILKDRPSW  240
FRDCRAVDMV NVLPTANGGT IELLYMQLYA PTTLAPGRDF WLLRYTSVMD DGSLVVCERS  300
LSNTQNGPSM PPVPNFVRAE MLPSGYLIRP CEGGGSIIHI VDHMNLEAWS VPEVLRPLYE  360
SSTVLAQRIT TAALRQLRQI AQDISQSSVN NWGRRPAALR ALS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072422.1	0.0	LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-15
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A142CD28	0.0	A0A142CD28_9LAMI; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A1V0JHU3	0.0	A0A1V0JHU3_SESIN; Homeobox-leucine zipper protein ATHB-15
STRING	Migut.I00906.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA457	24	140

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]