PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100093420101
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family DBB
Protein Properties Length: 274aa    MW: 29830 Da    PI: 4.8257
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100093420101genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.71.7e-06447542
                      zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                                   C+ +e  e++  C  ++  lC +C ++ H        H++vpl
  Ote100093420101|100093420101  4 QCNVCEAAEANVLCCADEAALCWSCDQNVHAAnklagkHQRVPL 47
                                  7******99*********************66899999999986 PP
2zf-B_box30.86e-105294137
                      zf-B_box  1 seerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                                  s+++kC+ ++e    +fC +++ llC++C +++H        H
  Ote100093420101|100093420101 52 SQMPKCDICQETVGYFFCLEDRALLCRKCDVAIHTAnplvsvH 94
                                  689*********9*********************555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.623147IPR000315B-box-type zinc finger
CDDcd000211.17E-7347No hitNo description
SMARTSM003363.0E-10447IPR000315B-box-type zinc finger
SuperFamilySSF578452.47E-54594No hitNo description
SMARTSM003363.8E-165299IPR000315B-box-type zinc finger
PROSITE profilePS501199.0015299IPR000315B-box-type zinc finger
PfamPF006434.5E-75386IPR000315B-box-type zinc finger
CDDcd000213.55E-85599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MKIQCNVCEA AEANVLCCAD EAALCWSCDQ NVHAANKLAG KHQRVPLSTS SSQMPKCDIC  60
QETVGYFFCL EDRALLCRKC DVAIHTANPL VSVHQRFLLT GVKVSLEATE AQAAPSSGET  120
NNAEKFSKPE PHSLPKMIKP ISSYCKSMPV QVDGCGDHPL SKPPFTGGSS NGSFSQWQFD  180
EFMGYGDFTQ NYNFMDNGSS KADNGKLGDS DNSPILRAAE GEFEGDDCLG RVPETYWAVP  240
QIASPPTASG LYWPKNFDXX XXXXXXXXLC SCPT
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098187.11e-136B-box zinc finger protein 22
SwissprotQ9SYM25e-91BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A4D8YAG51e-149A0A4D8YAG5_SALSN; Uncharacterized protein
STRINGXP_009625544.11e-126(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28922346