PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100093170071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MIKC_MADS
Protein Properties Length: 219aa    MW: 25081.2 Da    PI: 7.6291
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100093170071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.55.4e-261421051
                                  HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  qvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Ote100093170071|100093170071  1 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 42
                                  8***************************************96 PP
2K-box92.47.6e-31691561198
                         K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                                   ea + s+qqe+ kLk+++e Lqr+qR+llGedL++L+ keL++Le+qL+ slk+iRs++++ +l+ ++elq+ke++l+e+n
  Ote100093170071|100093170071  69 EALELSSQQEYLKLKSRYEALQRTQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQAMLDTLQELQRKEHALNEAN 149
                                   4555689************************************************************************** PP

                         K-box  92 kaLrkkl 98 
                                   ++L+++l
  Ote100093170071|100093170071 150 RSLKQRL 156
                                   ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.83E-25159IPR002100Transcription factor, MADS-box
CDDcd002651.64E-33159No hitNo description
SMARTSM004325.7E-21143IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.348144IPR002100Transcription factor, MADS-box
PfamPF003191.4E-21140IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-19621IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-192142IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.79272162IPR002487Transcription factor, K-box
PfamPF014867.1E-2574156IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
QVTFAKRRNG LLKKAYELSV LCDAEVALII FSNRGKLYEF CSSSSMLKTL ERYQKCNYGA  60
PEPNVSTREA LELSSQQEYL KLKSRYEALQ RTQRNLLGED LGPLNSKELE SLERQLDMSL  120
KQIRSTRTQA MLDTLQELQR KEHALNEANR SLKQRLIEGS QSIHWNPNEH DGVAYGRQHQ  180
PPADHVFYHP LELEPTLQIG FHQNDPAAGP STVNNYISP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A5e-45581591104Developmental protein SEPALLATA 3
4ox0_B5e-45581591104Developmental protein SEPALLATA 3
4ox0_C5e-45581591104Developmental protein SEPALLATA 3
4ox0_D5e-45581591104Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086825.11e-127agamous-like MADS-box protein AGL9 homolog
SwissprotQ034891e-124AGL9_PETHY; Agamous-like MADS-box protein AGL9 homolog
TrEMBLQ387331e-125Q38733_ANTMA; DEFH200 protein
STRINGSolyc05g015750.2.11e-123(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Publications ? help Back to Top
  1. Immink RG,Gadella TW,Ferrario S,Busscher M,Angenent GC
    Analysis of MADS box protein-protein interactions in living plant cells.
    Proc. Natl. Acad. Sci. U.S.A., 2002. 99(4): p. 2416-21
    [PMID:11854533]
  2. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  3. Angenent GC,Busscher M,Franken J,Mol JN,van Tunen AJ
    Differential expression of two MADS box genes in wild-type and mutant petunia flowers.
    Plant Cell, 1992. 4(8): p. 983-93
    [PMID:1356537]
  4. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]