PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100093050051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

M-type_MADS

Protein Properties

Length: 84aa MW: 9700.41 Da PI: 10.8015

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100093050051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.4	2.2e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rqvtfskRrng+lKKA+ELSvLCd ++avii+s +gkly y+s Ote100093050051\|100093050051 9 KRIEDKSARQVTFSKRRNGLLKKAKELSVLCDLDIAVIIYSCRGKLYQYCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	30.109	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.55E-29	1	64	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-37	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.45E-34	2	60	No hit	No description
PRINTS	PR00404	2.1E-27	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.9E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-27	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-27	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 84 aa Download sequence Send to blast
MGRRKLEIKR IEDKSARQVT FSKRRNGLLK KAKELSVLCD LDIAVIIYSC RGKLYQYCSS 60 NRSVISPSNY WLKLVSSSIF RNLG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	9e-20	1	61	1	61	MEF2C
5f28_B	9e-20	1	61	1	61	MEF2C
5f28_C	9e-20	1	61	1	61	MEF2C
5f28_D	9e-20	1	61	1	61	MEF2C
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.
UniProt	Transcription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086821.1	6e-31	MADS-box transcription factor 7-like isoform X1
Refseq	XP_011086822.1	6e-31	MADS-box transcription factor 7-like isoform X2
Refseq	XP_011086823.1	6e-31	MADS-box transcription factor 7-like isoform X3
Refseq	XP_020551812.1	4e-31	MADS-box transcription factor 7-like isoform X4
Refseq	XP_022881723.1	3e-31	MADS-box transcription factor 7-like
Swissprot	Q03378	2e-24	GLOB_ANTMA; Floral homeotic protein GLOBOSA
Swissprot	Q8LLR2	4e-24	MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBL	A0A2G9GZR7	3e-31	A0A2G9GZR7_9LAMI; Uncharacterized protein
TrEMBL	A0A2G9GZX1	3e-31	A0A2G9GZX1_9LAMI; Uncharacterized protein
STRING	Solyc05g015730.1.1	1e-27	(Solanum lycopersicum)
STRING	Migut.K00968.1.p	4e-27	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Publications ? help Back to Top
Tröbner W, et al. GLOBOSA: a homeotic gene which interacts with DEFICIENS in the control of Antirrhinum floral organogenesis. EMBO J., 1992. 11(13): p. 4693-704 [PMID:1361166] Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Gallois JL, et al. Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana. Gene, 2013. 526(2): p. 299-308 [PMID:23747397] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751] Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H Multiple interactions amongst floral homeotic MADS box proteins. EMBO J., 1996. 15(16): p. 4330-43 [PMID:8861961]