PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100092570011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 614aa MW: 66425.4 Da PI: 6.4095

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100092570011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.1	0.00073	408	425	38	55
STCHHHHHHHHHHHHHHH CS HLH 38 lsKaeiLekAveYIksLq 55 +Ka++L +A+eY+k Lq Ote100092570011\|100092570011 408 ADKASMLDEAIEYLKTLQ 425 58***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.2E-5	404	433	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-5	406	446	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	0.00301	409	429	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 614 aa Download sequence Send to blast
MPLSEFLRMA RGKLESSQQQ KSAPTDFSAR SENELVELVW ENGQVVMQGQ SSRVSRSPTL 60 NNLPSRVHDA RFGKFGGVES IMNDMAPVVP SGDMDLGQDD EIVPWLSYPM DDALVQDYVS 120 EMLPEISGVT ANGMSTQNSF VSVDKRASCE HTVSNLQSGA SNLKASSKDR LFGSWLPQHR 180 QTSDALGSGV TDIASNNSSN HLDAVLRNPT QSRDTVNGST CTTMERQNIP PSTNNSSFLN 240 FSHFSRPANL VKVNVPKSDG ITKSVSSFVE KVDVKEKGLA TNCSNPTKSV HVEKFNSIPK 300 HIDSHGSGML PTVNSRELAV NAPQGSCPPQ RTDNLCQETS NNIVKALHPS NNEDIIKGAP 360 EGERSIEPMV ASSSVGSGNS ADRVSCEQTH HSKRKFREVE ESECRSDADK ASMLDEAIEY 420 LKTLQLQVQI MSMGSGLYIP PMMFPTGIQH MHPAHFQPXX XXXXXXXXXP DMNGGSSSCP 480 IFPVPPLQVP HFPSNFQRVP GPNLPVFGQA LPSSAPRTAF VPLAPRPPLA TFPSAFRNGS 540 TSTSRIMNSG DPLTTMNSRP MCKAEASNSV NNKSNQLQPR NEVGDESAAA TQHNKNAADA 600 PALLSATDIN KEPG

Sequence ? help Back to Top

Protein Sequence Length: 614 aa Download sequence Send to blast

MPLSEFLRMA RGKLESSQQQ KSAPTDFSAR SENELVELVW ENGQVVMQGQ SSRVSRSPTL  60
NNLPSRVHDA RFGKFGGVES IMNDMAPVVP SGDMDLGQDD EIVPWLSYPM DDALVQDYVS  120
EMLPEISGVT ANGMSTQNSF VSVDKRASCE HTVSNLQSGA SNLKASSKDR LFGSWLPQHR  180
QTSDALGSGV TDIASNNSSN HLDAVLRNPT QSRDTVNGST CTTMERQNIP PSTNNSSFLN  240
FSHFSRPANL VKVNVPKSDG ITKSVSSFVE KVDVKEKGLA TNCSNPTKSV HVEKFNSIPK  300
HIDSHGSGML PTVNSRELAV NAPQGSCPPQ RTDNLCQETS NNIVKALHPS NNEDIIKGAP  360
EGERSIEPMV ASSSVGSGNS ADRVSCEQTH HSKRKFREVE ESECRSDADK ASMLDEAIEY  420
LKTLQLQVQI MSMGSGLYIP PMMFPTGIQH MHPAHFQPXX XXXXXXXXXP DMNGGSSSCP  480
IFPVPPLQVP HFPSNFQRVP GPNLPVFGQA LPSSAPRTAF VPLAPRPPLA TFPSAFRNGS  540
TSTSRIMNSG DPLTTMNSRP MCKAEASNSV NNKSNQLQPR NEVGDESAAA TQHNKNAADA  600
PALLSATDIN KEPG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087568.1	0.0	transcription factor PIF3 isoform X3
Refseq	XP_020552005.1	0.0	transcription factor PIF3 isoform X2
TrEMBL	A0A0H3YC53	0.0	A0A0H3YC53_SALMI; Basic helix-loop-helix transcription factor

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4965	24	37