PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100092510021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | C2H2 | ||||||||
Protein Properties | Length: 153aa MW: 17641.9 Da PI: 8.6534 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.2e-05 | 24 | 46 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k F + L H+++H Ote100092510021|100092510021 24 YKCSFCSKEFVSAQALGGHMNVH 46 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.84E-7 | 21 | 51 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.0E-4 | 22 | 48 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0028 | 24 | 46 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.697 | 24 | 51 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.3E-7 | 24 | 47 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 26 | 46 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MEKMKRCCDG DWSSERDLWP QRIYKCSFCS KEFVSAQALG GHMNVHRRDR ARMRLYPNPN 60 PNPSFPKFSS AINEDGVIVP AIRHSSPHHV MALLGXXXXX XXXXXXXFED FTRNNDVRVY 120 KAKEFVGLDL NLGLIQDATX XXXXXXXXXX XXS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080293.1 | 2e-23 | transcriptional regulator SUPERMAN-like | ||||
TrEMBL | A0A1S4BCM5 | 2e-21 | A0A1S4BCM5_TOBAC; transcriptional regulator SUPERMAN-like | ||||
TrEMBL | A0A1U7XNJ2 | 2e-21 | A0A1U7XNJ2_NICSY; transcriptional regulator SUPERMAN-like | ||||
TrEMBL | A0A2Z7AJ15 | 2e-21 | A0A2Z7AJ15_9LAMI; Transcriptional regulator SUPERMAN-like | ||||
STRING | XP_009788060.1 | 4e-22 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2110 | 24 | 53 |