PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100092200101
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ARR-B
Protein Properties Length: 648aa    MW: 71340.1 Da    PI: 5.2567
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100092200101genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like27.47.7e-09217238122
                       G2-like   1 kprlrWtpeLHerFveaveqLG 22 
                                   kpr++W+ eLH++Fv av+qLG
  Ote100092200101|100092200101 217 KPRVVWSIELHRKFVAAVNQLG 238
                                   79*******************6 PP
2G2-like47.63.6e-152692982655
                       G2-like  26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                   +A+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  Ote100092200101|100092200101 269 EAVPKRILDLMNVEGLTRENVASHLQKYRL 298
                                   79***************************8 PP
3Response_reg61.35.2e-216214725109
                                   EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS-- CS
                  Response_reg  25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfd 103
                                    v+++++++ al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+g+++++ + +  Ga d+l+Kp+ 
  Ote100092200101|100092200101  62 TVTTTSQARMALKMLRENKdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDPKLVMKGVTHGACDYLVKPVR 141
                                   6999***********888889*******************87754.558******************************** PP

                                   HHHHHH CS
                  Response_reg 104 peelvk 109
                                   +eel++
  Ote100092200101|100092200101 142 IEELRN 147
                                   ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.13E-2916158IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.4E-3916170No hitNo description
SMARTSM004488.3E-2417149IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011038.54318153IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.24E-2520153No hitNo description
PfamPF000722.1E-1762148IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:1.10.10.603.0E-27214303IPR009057Homeodomain-like
SuperFamilySSF466892.15E-14215242IPR009057Homeodomain-like
TIGRFAMsTIGR015577.2E-13268298IPR006447Myb domain, plants
SuperFamilySSF466892.15E-14271302IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MTVEKVGDNY DDFPAGLRVL AVDDDPICLK LLDTLLRKCQ YHDFADTNHV HEEKPELSLS  60
LTVTTTSQAR MALKMLRENK DRFDLVISDV HMPDMDGFKL LELVGLEMDL PVIMLSANGD  120
PKLVMKGVTH GACDYLVKPV RIEELRNIWQ HVIRRKKTDT KSHNSSTDQG NVNQSNGEGN  180
ASQPDKSGKF NRKRKDEEDL SEENNGNEGD DPSSQKKPRV VWSIELHRKF VAAVNQLGIE  240
SNSCILTDLI LDTMCCLCFL LDPFFTNAEA VPKRILDLMN VEGLTRENVA SHLQKYRLYL  300
KRISSVASQQ ANMVAALGVK DSPFXXXXXX XXXXXXXDGL ADFRAFSAQG RVPNAALSHY  360
SAGGMLGRLN TPNINLHNLT PSTLIQPNHA QNLPNPINAL GKVHPTLTPT NQSPGLFQGI  420
PSSLELNQAS FSSVDDSRFK NNATNGFTEP IATICSSSNP MILHGNYQKT MSSGGFGSNI  480
ASINSDSFNV GVNSPSSLLE TGAVQSSTTQ PPPLLSADPF QSSFSSSPYL QKNMVELPST  540
TMALPLDDCR ESLVGDVQDV QKATHSTHWG EQASTFGVVT PLSQSVDMFM NGRLAGNEHE  600
KVPMESRTMS YDPLDAMMMH QAMIKREQDE SIANCDFGFD DYSFGSGM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084015.10.0two-component response regulator ARR12
TrEMBLA0A4D8ZTF50.0A0A4D8ZTF5_SALSN; Two-component response regulator ARR-B family
STRINGXP_009757804.10.0(Nicotiana sylvestris)
STRINGMigut.J01315.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458