PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100090660121

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

ARF

Protein Properties

Length: 779aa MW: 87029.6 Da PI: 5.6645

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100090660121	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	67.2	2.4e-21	143	233	1	88
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 f+k+lt sd++++g +++ +++a+e+ + k++ +++l +d++g++W++++i+r++++r++l++GW+ Fv++++L Ote100090660121\|100090660121 143 FCKTLTASDTSTHGGFSVLRRHADEClppldmS-KQPPTQELLAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLV 222 99***************************63.4444569************************************ PP TT-EEEEEE-SSS CS B3 76 egDfvvFkldgrs 88 +gD ++F ++ s Ote100090660121\|100090660121 223 AGDAFIFLRT--S 233 *****943..3 PP
2	Auxin_resp	92.2	8.7e-31	231	296	18	83
Auxin_resp 18 rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 r+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+dp rWp+SkWrsLk Ote100090660121\|100090660121 231 RTSPAEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPKRWPDSKWRSLK 296 789*************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.2E-34	139	239	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.01E-33	140	238	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.35E-18	142	239	No hit	No description
SMART	SM01019	8.2E-18	143	242	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.659	143	245	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.4E-19	143	233	IPR003340	B3 DNA binding domain
Pfam	PF06507	1.7E-27	231	296	IPR010525	Auxin response factor
SuperFamily	SSF54277	8.5E-11	659	741	No hit	No description
PROSITE profile	PS51745	23.555	664	746	IPR000270	PB1 domain
Pfam	PF02309	2.5E-6	709	752	IPR033389	AUX/IAA domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008285	Biological Process	negative regulation of cell proliferation
GO:0009737	Biological Process	response to abscisic acid
GO:0009911	Biological Process	positive regulation of flower development
GO:0010047	Biological Process	fruit dehiscence
GO:0010150	Biological Process	leaf senescence
GO:0010227	Biological Process	floral organ abscission
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 779 aa Download sequence Send to blast
MDASAVSIKG YNDVGGSDPA PENMTSDAGR VDVERALYTE LWKACAGPLV TVPRENELVF 60 YFPQGHIEQV EASTNQSSDQ QMPVYNLPPK ILCRVVNVQL KAEADTDEVF AQITLMPEPN 120 QDENAERKEP PPVPPPHLRV YSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMSKQPPT 180 QELLAKDLHG NEWRFRHIFR GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RTSPAEFIVP 240 YDQYMESIKN NYSIGMRFKM RFEGEEAPEQ RFTGTIVGIE DADPKRWPDS KWRSLKVRWD 300 ETSAILRPDR VSPWKIEHTL SPPALNPVPV PRLKRPRPTV LPSSSESSVV TRDGPIKMAA 360 DPAPANNGFP RVLQGQESST LRSPYCESNE LDSSEKTYLW KPSSDDEKID FSTSRRYGSD 420 NWSPLGRPES SFTDLLSGFG SKINTPHDFS TPLGNQAICK RQTQESDAKF SLMGNIWSLM 480 PSGGLSLNLM DSSMKNHVQG AADANFLARG DGRRGAFGDL PMITDPRGEN QEANWLMPPP 540 VSTYLQMRPS QTRELMPFSV FSQHDAMKQK EGSCKLFGIP LTSKSSPSEP EVSHRNVINP 600 SGFMQNSSHS HKFPSIEFDQ RSDTSKGSKV EDHKAAASEQ DNQFQSVTHS ATERESKGHS 660 SSSRSCTKVH KQGSALGRSV DLAKFNGYDE LISELDDLFD FRGELKTGNK NWLVVYTDDE 720 DDMMLVGDDP WGEFCCMVRK ILILTKEEVQ RMNPGTLNLK AEETSLAADS VDTALMNLP

Sequence ? help Back to Top

Protein Sequence Length: 779 aa Download sequence Send to blast

MDASAVSIKG YNDVGGSDPA PENMTSDAGR VDVERALYTE LWKACAGPLV TVPRENELVF  60
YFPQGHIEQV EASTNQSSDQ QMPVYNLPPK ILCRVVNVQL KAEADTDEVF AQITLMPEPN  120
QDENAERKEP PPVPPPHLRV YSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMSKQPPT  180
QELLAKDLHG NEWRFRHIFR GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RTSPAEFIVP  240
YDQYMESIKN NYSIGMRFKM RFEGEEAPEQ RFTGTIVGIE DADPKRWPDS KWRSLKVRWD  300
ETSAILRPDR VSPWKIEHTL SPPALNPVPV PRLKRPRPTV LPSSSESSVV TRDGPIKMAA  360
DPAPANNGFP RVLQGQESST LRSPYCESNE LDSSEKTYLW KPSSDDEKID FSTSRRYGSD  420
NWSPLGRPES SFTDLLSGFG SKINTPHDFS TPLGNQAICK RQTQESDAKF SLMGNIWSLM  480
PSGGLSLNLM DSSMKNHVQG AADANFLARG DGRRGAFGDL PMITDPRGEN QEANWLMPPP  540
VSTYLQMRPS QTRELMPFSV FSQHDAMKQK EGSCKLFGIP LTSKSSPSEP EVSHRNVINP  600
SGFMQNSSHS HKFPSIEFDQ RSDTSKGSKV EDHKAAASEQ DNQFQSVTHS ATERESKGHS  660
SSSRSCTKVH KQGSALGRSV DLAKFNGYDE LISELDDLFD FRGELKTGNK NWLVVYTDDE  720
DDMMLVGDDP WGEFCCMVRK ILILTKEEVQ RMNPGTLNLK AEETSLAADS VDTALMNLP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldv_A	1e-126	36	317	18	353	Auxin response factor 1
4ldw_A	1e-126	36	317	18	353	Auxin response factor 1
4ldw_B	1e-126	36	317	18	353	Auxin response factor 1
4ldx_A	1e-125	36	317	18	353	Auxin response factor 1
4ldx_B	1e-125	36	317	18	353	Auxin response factor 1
4ldy_A	1e-125	36	317	18	353	Auxin response factor 1
4ldy_B	1e-125	36	317	18	353	Auxin response factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor. Involved in the control of fruit ripening process. Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26716451, PubMed:26959229). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). {ECO:0000255\|RuleBase:RU004561, ECO:0000269\|PubMed:26716451, ECO:0000269\|PubMed:26959229}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00574	DAP	Transfer from AT5G62000	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By tomato fruit ripening. Expression is up-regulated by plant hormone auxin in tomato fruits. {ECO:0000269\|PubMed:26716451}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073189.1	0.0	auxin response factor 2-like
Swissprot	K4DF01	0.0	ARF2B_SOLLC; Auxin response factor 2B
TrEMBL	A0A4D8XVP8	0.0	A0A4D8XVP8_SALSN; Uncharacterized protein
STRING	Migut.I00613.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2618	24	44

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Breitel DA, et al. AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening. PLoS Genet., 2016. 12(3): p. e1005903 [PMID:26959229]