PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100090470021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | GRAS | ||||||||
Protein Properties | Length: 535aa MW: 59941.8 Da PI: 5.1059 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 82 | 1.1e-25 | 210 | 315 | 1 | 109 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 l+elL++cA+a+s+++l + ++l+++ + +s +g+p+qRl ay++e+L ar +s++++y+al+++e + s++ l+++ Ote100090470021|100090470021 210 LKELLIACARALSENNLDEFEKLVEHARAAVSISGEPIQRLGAYLVEGLVARKESSGTNIYRALKCNEPD---SKDLLSYM 287 5799*****************************************************************9...9******* PP GRAS 82 klfsevsPilkfshltaNqaIleavege 109 ++++e++P+lkf++++aN aI ea+++ Ote100090470021|100090470021 288 HILYEICPYLKFGYMAANGAIAEAFSKY 315 *************************986 PP | |||||||
2 | GRAS | 248.4 | 2.8e-76 | 318 | 534 | 155 | 373 |
GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235 + l ++++ La + e+++v++ef++ v d++ e+L+++pgEalaVn+ lqlh+++desv+++++rd +L++vksl+ Ote100090470021|100090470021 318 GDGLAAVERHLAAISEKFNVNVEFHA-VPVFAPDIKKEMLDIRPGEALAVNFPLQLHHTPDESVDVSNPRDGLLRMVKSLN 397 678999********************.688899************************************************ PP GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316 Pkvv++veqe+++n+++Fl rf e+l+yysa+f+s+++++pre +eri+vE+++l+r+ivn++aceg+er+erhe l+kWr Ote100090470021|100090470021 398 PKVVTLVEQESNTNTAPFLPRFKETLDYYSAMFESIDVTMPREMKERINVEQQCLARDIVNIIACEGSERVERHELLGKWR 478 ********************************************************************************* PP GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 r+++aGF+p pls+++++ ++ llr+++ + y++ e++g+l+lgWk+r+Lvs+SaW Ote100090470021|100090470021 479 LRFMMAGFRPFPLSSYVNSVIRGLLRRYS-EHYTLLEKDGTLLLGWKERNLVSASAW 534 *****************************.55************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 34.359 | 96 | 516 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.6E-23 | 210 | 315 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.6E-74 | 318 | 534 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 535 aa Download sequence Send to blast |
MDSHYLGYRG SDLSYSSYTT VSSIPTRLFE SLKFDSRNSP NSPFSTHFET NTVTVYSDSQ 60 EQQSPSDYFS ETTPSSDSSV DYSVNPHQSS AFAYHYQDSS STITGLPTFL SNASNSQNIE 120 HALLELESAL MAPEVNEEVT TSESLSEANS QSQTPDGRPR GCNQEAQGSQ SHHSESHDSW 180 IAGSSNQFRI DNRRGGREDF ALQGFPPNNL KELLIACARA LSENNLDEFE KLVEHARAAV 240 SISGEPIQRL GAYLVEGLVA RKESSGTNIY RALKCNEPDS KDLLSYMHIL YEICPYLKFG 300 YMAANGAIAE AFSKYARGDG LAAVERHLAA ISEKFNVNVE FHAVPVFAPD IKKEMLDIRP 360 GEALAVNFPL QLHHTPDESV DVSNPRDGLL RMVKSLNPKV VTLVEQESNT NTAPFLPRFK 420 ETLDYYSAMF ESIDVTMPRE MKERINVEQQ CLARDIVNII ACEGSERVER HELLGKWRLR 480 FMMAGFRPFP LSSYVNSVIR GLLRRYSEHY TLLEKDGTLL LGWKERNLVS ASAWC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-38 | 217 | 534 | 25 | 377 | Protein SCARECROW |
5b3h_D | 2e-38 | 217 | 534 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095306.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_020553937.1 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q69VG1 | 1e-176 | CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1 | ||||
TrEMBL | A0A4D8ZBW2 | 0.0 | A0A4D8ZBW2_SALSN; Uncharacterized protein | ||||
STRING | Migut.M01823.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3441 | 24 | 48 |
Publications ? help Back to Top | |||
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