PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100090470021
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 535aa    MW: 59941.8 Da    PI: 5.1059
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100090470021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS821.1e-252103151109
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                   l+elL++cA+a+s+++l + ++l+++ +  +s +g+p+qRl ay++e+L ar  +s++++y+al+++e +   s++ l+++
  Ote100090470021|100090470021 210 LKELLIACARALSENNLDEFEKLVEHARAAVSISGEPIQRLGAYLVEGLVARKESSGTNIYRALKCNEPD---SKDLLSYM 287
                                   5799*****************************************************************9...9******* PP

                          GRAS  82 klfsevsPilkfshltaNqaIleavege 109
                                   ++++e++P+lkf++++aN aI ea+++ 
  Ote100090470021|100090470021 288 HILYEICPYLKFGYMAANGAIAEAFSKY 315
                                   *************************986 PP

2GRAS248.42.8e-76318534155373
                          GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235
                                    + l ++++ La + e+++v++ef++ v     d++ e+L+++pgEalaVn+ lqlh+++desv+++++rd +L++vksl+
  Ote100090470021|100090470021 318 GDGLAAVERHLAAISEKFNVNVEFHA-VPVFAPDIKKEMLDIRPGEALAVNFPLQLHHTPDESVDVSNPRDGLLRMVKSLN 397
                                   678999********************.688899************************************************ PP

                          GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316
                                   Pkvv++veqe+++n+++Fl rf e+l+yysa+f+s+++++pre +eri+vE+++l+r+ivn++aceg+er+erhe l+kWr
  Ote100090470021|100090470021 398 PKVVTLVEQESNTNTAPFLPRFKETLDYYSAMFESIDVTMPREMKERINVEQQCLARDIVNIIACEGSERVERHELLGKWR 478
                                   ********************************************************************************* PP

                          GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                    r+++aGF+p pls+++++ ++ llr+++ + y++ e++g+l+lgWk+r+Lvs+SaW
  Ote100090470021|100090470021 479 LRFMMAGFRPFPLSSYVNSVIRGLLRRYS-EHYTLLEKDGTLLLGWKERNLVSASAW 534
                                   *****************************.55************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.35996516IPR005202Transcription factor GRAS
PfamPF035143.6E-23210315IPR005202Transcription factor GRAS
PfamPF035149.6E-74318534IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MDSHYLGYRG SDLSYSSYTT VSSIPTRLFE SLKFDSRNSP NSPFSTHFET NTVTVYSDSQ  60
EQQSPSDYFS ETTPSSDSSV DYSVNPHQSS AFAYHYQDSS STITGLPTFL SNASNSQNIE  120
HALLELESAL MAPEVNEEVT TSESLSEANS QSQTPDGRPR GCNQEAQGSQ SHHSESHDSW  180
IAGSSNQFRI DNRRGGREDF ALQGFPPNNL KELLIACARA LSENNLDEFE KLVEHARAAV  240
SISGEPIQRL GAYLVEGLVA RKESSGTNIY RALKCNEPDS KDLLSYMHIL YEICPYLKFG  300
YMAANGAIAE AFSKYARGDG LAAVERHLAA ISEKFNVNVE FHAVPVFAPD IKKEMLDIRP  360
GEALAVNFPL QLHHTPDESV DVSNPRDGLL RMVKSLNPKV VTLVEQESNT NTAPFLPRFK  420
ETLDYYSAMF ESIDVTMPRE MKERINVEQQ CLARDIVNII ACEGSERVER HELLGKWRLR  480
FMMAGFRPFP LSSYVNSVIR GLLRRYSEHY TLLEKDGTLL LGWKERNLVS ASAWC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-3821753425377Protein SCARECROW
5b3h_D2e-3821753425377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095306.10.0scarecrow-like protein 21
RefseqXP_020553937.10.0scarecrow-like protein 21
SwissprotQ69VG11e-176CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A4D8ZBW20.0A0A4D8ZBW2_SALSN; Uncharacterized protein
STRINGMigut.M01823.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]