PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100090380011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family AP2
Protein Properties Length: 329aa    MW: 37464 Da    PI: 8.6789
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100090380011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.97.9e-1644103155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++g
  Ote100090380011|100090380011  44 SVYRGVTRHRWTGRYEAHLWDkNCWNEaqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 103
                                   78*******************999966655446*************************98 PP
2AP252.41.3e-16146197155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Ote100090380011|100090380011 146 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDMAAIEYRG 197
                                   89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.2E-1744113IPR016177DNA-binding domain
PfamPF008478.8E-1244103IPR001471AP2/ERF domain
PROSITE profilePS5103220.33645111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-1645112IPR001471AP2/ERF domain
SMARTSM003807.0E-2645117IPR001471AP2/ERF domain
PRINTSPR003673.5E-64657IPR001471AP2/ERF domain
CDDcd000182.73E-24146207No hitNo description
PfamPF008474.0E-12146197IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18146207IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-17147206IPR001471AP2/ERF domain
PROSITE profilePS5103218.189147205IPR001471AP2/ERF domain
SMARTSM003804.6E-25147211IPR001471AP2/ERF domain
PRINTSPR003673.5E-6187207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MVKLSQQNMK NSSNANTNPV NNPVMKAKRT RKTIPRDSPP KRSSVYRGVT RHRWTGRYEA  60
HLWDKNCWNE AQNKKGRQVY LGAYDDEEAA AHAYDLAALK YWGQDTILNF PVSTYQKELM  120
NMEGQSREEY IGSLRRKSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYAT  180
QEEAAIAYDM AAIEYRGLNA VTNFDLSRYI KWLRPNNNHQ HVETKSASDC SSHLLPQQSD  240
AALSQSRPAT SALGLLLQSS KFKEMMEMTL AAETPIETDP PQCDIPADIF EANAFSVYNH  300
QGDDLFGELL MQQPMVHFDS MLNGEDLVL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547685.11e-177AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-106AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A4D8Z3J01e-173A0A4D8Z3J0_SALSN; AP2-like factor, ANT lineage
STRINGGorai.012G098200.11e-154(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]