PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100090290061

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

ARR-B

Protein Properties

Length: 487aa MW: 53459.3 Da PI: 5.3245

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100090290061	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	81.6	8.6e-26	194	247	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL ++kA Pk+ilelm+v+gLt+e++ SHLQkYRl Ote100090290061\|100090290061 194 KPRVVWSVELHRQFVTAVNQL-EIDKAGPKKILELMNVPGLTRENISSHLQKYRL 247 79*****************.9*****************************8 PP
2	Response_reg	64.6	4.7e-22	33	134	1	102
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvta 79 vl+vdD+p+ +++l+++l+k y ev+++ +e al+ l++++ +++++ D+ mp+mdG+++l++ e +lp+i+++ Ote100090290061\|100090290061 33 VLVVDDDPTCLRILEKMLKKCLY-EVTTCNRAEVALNFLRDSKsgFEIVISDVHMPDMDGFKVLEHVGLEM-DLPVIMMSV 111 89*******************.***********999999******************6644.8**** PP TTTHHHHHHHHHTTESEEEESS- CS Response_reg 80 hgeeedalealkaGakdflsKpf 102 +++ + + + Ga d+l Kp Ote100090290061\|100090290061 112 DESKHVVMKGVTHGACDYLIKPE 134 ********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52172	9.53E-28	30	133	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	2.8E-32	30	141	No hit	No description
SMART	SM00448	8.6E-20	31	144	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	34.094	32	147	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	1.9E-19	33	134	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	5.22E-22	34	133	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.1E-29	191	251	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.6E-19	191	251	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.3E-22	194	247	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-5	196	246	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MDLGVKSPPN TSPTASWKSG DVIAGHFPAG LKVLVVDDDP TCLRILEKML KKCLYEVTTC 60 NRAEVALNFL RDSKSGFEIV ISDVHMPDMD GFKVLEHVGL EMDLPVIMMS VDESKHVVMK 120 GVTHGACDYL IKPEWKDKDL EHSGSVEEGE RQQKPLEDVD CSSSVSKANR RNSKKRKYEE 180 DGVEDRGDTS TSKKPRVVWS VELHRQFVTA VNQLEIDKAG PKKILELMNV PGLTRENISS 240 HLQKYRLYLR RLVGLSQHQN GLGNSFMGSS DAPFGSMSAL NGVDLQALAA SGQMPSQSLA 300 SIQAATVGRA TTNSSITLPH VEHVLSQAIP SDGLGRNGIE NNLGPQCTLI SQPSTSADFS 360 SQNTEFSGNS CPVESNTGTR GSRCCLPRNV NQNMNQDWHW HNVGSTVMPS NMQQQLSCVP 420 SANKASSLMH EEGYGNMSQL LNLSEEVPEM GLLFGQEDFV KPLSELCLLQ QEGFENEFGF 480 HLDDLPV

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MDLGVKSPPN TSPTASWKSG DVIAGHFPAG LKVLVVDDDP TCLRILEKML KKCLYEVTTC  60
NRAEVALNFL RDSKSGFEIV ISDVHMPDMD GFKVLEHVGL EMDLPVIMMS VDESKHVVMK  120
GVTHGACDYL IKPEWKDKDL EHSGSVEEGE RQQKPLEDVD CSSSVSKANR RNSKKRKYEE  180
DGVEDRGDTS TSKKPRVVWS VELHRQFVTA VNQLEIDKAG PKKILELMNV PGLTRENISS  240
HLQKYRLYLR RLVGLSQHQN GLGNSFMGSS DAPFGSMSAL NGVDLQALAA SGQMPSQSLA  300
SIQAATVGRA TTNSSITLPH VEHVLSQAIP SDGLGRNGIE NNLGPQCTLI SQPSTSADFS  360
SQNTEFSGNS CPVESNTGTR GSRCCLPRNV NQNMNQDWHW HNVGSTVMPS NMQQQLSCVP  420
SANKASSLMH EEGYGNMSQL LNLSEEVPEM GLLFGQEDFV KPLSELCLLQ QEGFENEFGF  480
HLDDLPV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	9e-19	190	252	1	63	ARR10-B
5lxu_A	8e-19	194	250	1	57	Transcription factor LUX
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269\|PubMed:11574878, ECO:0000269\|PubMed:11691951, ECO:0000269\|PubMed:17363254, ECO:0000269\|PubMed:19039136}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by gibberellin. {ECO:0000269\|PubMed:20605455}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100812.1	1e-169	two-component response regulator ARR2 isoform X1
Refseq	XP_011100814.1	1e-169	two-component response regulator ARR2 isoform X3
Swissprot	Q940D0	1e-129	ARR1_ARATH; Two-component response regulator ARR1
TrEMBL	A0A2G9HNZ3	1e-162	A0A2G9HNZ3_9LAMI; Two-component response regulator
STRING	Migut.G00111.1.p	1e-159	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7749	21	30

Publications ? help Back to Top
Bürkle L,Meyer S,Dortay H,Lehrach H,Heyl A In vitro recombination cloning of entire cDNA libraries in Arabidopsis thaliana and its application to the yeast two-hybrid system. Funct. Integr. Genomics, 2005. 5(3): p. 175-83 [PMID:15714319] Moubayidin L, et al. Spatial coordination between stem cell activity and cell differentiation in the root meristem. Dev. Cell, 2013. 26(4): p. 405-15 [PMID:23987513] Takahashi N, et al. Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots. Curr. Biol., 2013. 23(18): p. 1812-7 [PMID:24035544] Kurepa J,Li Y,Perry SE,Smalle JA Ectopic expression of the phosphomimic mutant version of Arabidopsis response regulator 1 promotes a constitutive cytokinin response phenotype. BMC Plant Biol., 2014. 14: p. 28 [PMID:24423196] Cortleven A, et al. A novel protective function for cytokinin in the light stress response is mediated by the Arabidopsis histidine kinase2 and Arabidopsis histidine kinase3 receptors. Plant Physiol., 2014. 164(3): p. 1470-83 [PMID:24424319] Marín-de la Rosa N, et al. Genome Wide Binding Site Analysis Reveals Transcriptional Coactivation of Cytokinin-Responsive Genes by DELLA Proteins. PLoS Genet., 2015. 11(7): p. e1005337 [PMID:26134422] D'Alessandro S,Golin S,Hardtke CS,Lo Schiavo F,Zottini M The co-chaperone p23 controls root development through the modulation of auxin distribution in the Arabidopsis root meristem. J. Exp. Bot., 2015. 66(16): p. 5113-22 [PMID:26163704] Jiang L, et al. Strigolactones spatially influence lateral root development through the cytokinin signaling network. J. Exp. Bot., 2016. 67(1): p. 379-89 [PMID:26519957] Moubayidin L, et al. A SCARECROW-based regulatory circuit controls Arabidopsis thaliana meristem size from the root endodermis. Planta, 2016. 243(5): p. 1159-68 [PMID:26848984] Muraro D, et al. A multi-scale model of the interplay between cell signalling and hormone transport in specifying the root meristem of Arabidopsis thaliana. J. Theor. Biol., 2016. 404: p. 182-205 [PMID:27157127] Cortleven A, et al. Cytokinin Regulates the Etioplast-Chloroplast Transition through the Two-Component Signaling System and Activation of Chloroplast-Related Genes. Plant Physiol., 2016. 172(1): p. 464-78 [PMID:27388681] Kobayashi K, et al. Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling. Plant Physiol., 2017. 173(4): p. 2340-2355 [PMID:28193764] Zhang TQ, et al. A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration. Plant Cell, 2017. 29(5): p. 1073-1087 [PMID:28389585] Kushwah S,Laxmi A The interaction between glucose and cytokinin signaling in controlling Arabidopsis thaliana seedling root growth and development. Plant Signal Behav, 2017. 12(5): p. e1312241 [PMID:28467152] Meng WJ, et al. Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL. Plant Cell, 2017. 29(6): p. 1357-1372 [PMID:28576846] Kobayashi K,Iwase A Simultaneous but spatially different regulation of non-photosynthetic callus formation and photosynthetic root development after shoot removal. Plant Signal Behav, 2017. 12(6): p. e1338999 [PMID:28594268] Liu B,De Storme N,Geelen D Cold interferes with male meiotic cytokinesis in Arabidopsis thaliana independently of the AHK2/3-AHP2/3/5 cytokinin signaling module. Cell Biol. Int., 2017. 41(8): p. 879-889 [PMID:28618065] Zhang F,May A,Irish VF Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL. Trends Plant Sci., 2017. 22(10): p. 815-817 [PMID:28886911] Yan Z, et al. Type B Response Regulators Act As Central Integrators in Transcriptional Control of the Auxin Biosynthesis Enzyme TAA1. Plant Physiol., 2017. 175(3): p. 1438-1454 [PMID:28931628] Rong XF, et al. Type-B ARRs Control Carpel Regeneration Through Mediating AGAMOUS Expression in Arabidopsis. Plant Cell Physiol., 2018. 59(4): p. 756-764 [PMID:29186581] Bustillo-Avendaño E, et al. Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis. Plant Physiol., 2018. 176(2): p. 1709-1727 [PMID:29233938] Waldie T,Leyser O Cytokinin Targets Auxin Transport to Promote Shoot Branching. Plant Physiol., 2018. 177(2): p. 803-818 [PMID:29717021]