PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100089290021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 165aa MW: 18591.4 Da PI: 10.0165 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.1 | 1.3e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gk y +s+ Ote100089290021|100089290021 9 KRIENPTNRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPSGKAYQFST 59 79***********************************************96 PP | |||||||
2 | K-box | 52.2 | 2.6e-18 | 85 | 144 | 13 | 72 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 e +++e++ L + +e L+ + +h+ Ge+L+ L +keL+qLe+qL +++++RskK +l Ote100089290021|100089290021 85 SVEVWRNEIEDLSRTVEALEAKEKHFAGENLSGLGMKELKQLERQLRVGVERVRSKKIKL 144 5688*****************************************************886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.772 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.43E-41 | 2 | 70 | No hit | No description |
SuperFamily | SSF55455 | 4.71E-32 | 2 | 71 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.2E-15 | 85 | 145 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 9.068 | 86 | 165 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MGRGKVELKR IENPTNRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP SGKAYQFSTH 60 DINRTITRYK IEVGIAKPDE LGITSVEVWR NEIEDLSRTV EALEAKEKHF AGENLSGLGM 120 KELKQLERQL RVGVERVRSK KIKLHELHEA TTSSIIIGSD ATGVF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 8e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 8e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 8e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 8e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time. {ECO:0000269|PubMed:19820190, ECO:0000269|Ref.8}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012830552.1 | 1e-93 | PREDICTED: MADS-box transcription factor 14-like isoform X1 | ||||
Swissprot | Q6EU39 | 3e-46 | MADS6_ORYSJ; MADS-box transcription factor 6 | ||||
TrEMBL | A0A022RSS8 | 3e-92 | A0A022RSS8_ERYGU; Uncharacterized protein | ||||
STRING | Migut.D01274.1.p | 6e-93 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |