PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100088610001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 402aa    MW: 43696.8 Da    PI: 7.9271
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100088610001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.56.3e-24170224259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv    +r+ +d +++++tYeg Hnh+
  Ote100088610001|100088610001 170 HDGCQWRKYGQKIAKGNPCPRAYYRCTVSsSCPV----QRCLDDMSILTTTYEGAHNHP 224
                                   7**************************9989*96....6688899*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-25154226IPR003657WRKY domain
SuperFamilySSF1182906.28E-22162226IPR003657WRKY domain
PROSITE profilePS5081122.286164226IPR003657WRKY domain
SMARTSM007747.1E-28169225IPR003657WRKY domain
PfamPF031065.5E-20171224IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MEEVREENER LKLTLSQMMK DYNSLKMQFN GISQEDQSKA KPTNLASMAT SDNESELVCL  60
SLGRFSADHS KRKEEIKNNN SLKETINLDG IELGLNCKSH LDNNVEDSRN LKTDENSSDG  120
SKEEEKNDAR SPRRSPTKTS RVEDEDILQH SPLKKPRVSV RAVCNTQTMH DGCQWRKYGQ  180
KIAKGNPCPR AYYRCTVSSS CPVQRCLDDM SILTTTYEGA HNHPLPASAT TMASATSAAA  240
AMLSCGSSAS PAAAPPTLLG FNNYPRTTIS TSQSHPTVIL DLTAPNHTNK FSSSALFSAP  300
TSKIAAAITH DPNFQSALAA AITSFVGKNN ASSSGMNYNL NFSQPSSTST SASIGCAATF  360
MNRFTQSMNF QQKSFAHFAP LTLPASKPQA MSLAEEGEQI KL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-16161226274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552049.11e-100probable WRKY transcription factor 72
SwissprotA0A3Q7GFB56e-71WK72A_SOLLC; WRKY transcription factor 72A
TrEMBLA0A4D8ZMU81e-156A0A4D8ZMU8_SALSN; Uncharacterized protein
STRINGMigut.L01332.1.p1e-120(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19452464
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]