PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100088040011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ERF
Protein Properties Length: 188aa    MW: 20658.7 Da    PI: 4.0031
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100088040011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.4e-161050246
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaa 46
                                  +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +
  Ote100088040011|100088040011 10 KFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVY 50
                                  89*******.**********72....45**************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.8E-22952IPR001471AP2/ERF domain
PfamPF008478.4E-101048IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-151052IPR016177DNA-binding domain
SMARTSM003807.3E-211066IPR001471AP2/ERF domain
PROSITE profilePS5103219.2031070IPR001471AP2/ERF domain
CDDcd000188.19E-231051No hitNo description
PRINTSPR003671.4E-101122IPR001471AP2/ERF domain
PRINTSPR003671.4E-103349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
KASEAGGARK FRGVRQRPWG KWAAEIRDPL RRVRLWLGTY DTAEEAAMVY NSGEESHNNA  60
TSPKSVLRFE SAANSXXXXX XXXXXXXSSC VFPLXXXXXX XXAVAGNEND GEAFSEFPIF  120
PPSDDLFAEF ENPGDLFDQT GFSNDMFDMG FCSSDFVIGS SADSGLGSTD DFFQDFGDIF  180
GSDPLVAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-13951447ATERF1
3gcc_A9e-13951447ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080873.12e-64ethylene-responsive transcription factor CRF2
TrEMBLA0A2G9HGW18e-60A0A2G9HGW1_9LAMI; Uncharacterized protein
STRINGMigut.A00686.1.p3e-58(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126