PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100087930001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 394aa MW: 43110.7 Da PI: 7.5566

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100087930001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.9	5.6e-11	327	371	6	54
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++Er RR +i +++ +L+e++P+ k + +++L +Av+YIk+L Ote100087930001\|100087930001 327 SIAERVRRTKISERMRKLQEVVPNM----EKQTNTSDMLDLAVDYIKEL 371 689*******************6....4679************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.551	321	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.37E-15	324	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.59E-11	325	376	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.4E-14	326	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.4E-8	327	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-11	327	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MNNHEQFQQN TQMGIGSGLT RYRSAPSSYF ASFTSSDGGF GEYDFAQLFN PRASSPETQL 60 IFSRFMNGSG ATQQTCPSNM APPPQQNPAL LQRQSDDYSS ASQIMYANHT SEAAPDSAAV 120 DGAFASFNSN CAAAAQRKME RPAPLIRHSS SPAGLFAKIN IENEFKTMRG VGSYGGGISA 180 NAEASFSSGS KLTRRMDYSS RHASSGMMDP IQEIGSKGMG ENAVDDEDHG NDVEYITGLP 240 ANSWDDSALM SDHYLNGVAN NDSKSFYSAN ASDDQKSEAS DRPKTLLSHH LSLPKSSAEL 300 SAMEKLLQDS VPCKIRAKRG CATHPRSIAE RVRRTKISER MRKLQEVVPN MEKQTNTSDM 360 LDLAVDYIKE LRRQVKMLSD NQANCNCSAK RRRS

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MNNHEQFQQN TQMGIGSGLT RYRSAPSSYF ASFTSSDGGF GEYDFAQLFN PRASSPETQL  60
IFSRFMNGSG ATQQTCPSNM APPPQQNPAL LQRQSDDYSS ASQIMYANHT SEAAPDSAAV  120
DGAFASFNSN CAAAAQRKME RPAPLIRHSS SPAGLFAKIN IENEFKTMRG VGSYGGGISA  180
NAEASFSSGS KLTRRMDYSS RHASSGMMDP IQEIGSKGMG ENAVDDEDHG NDVEYITGLP  240
ANSWDDSALM SDHYLNGVAN NDSKSFYSAN ASDDQKSEAS DRPKTLLSHH LSLPKSSAEL  300
SAMEKLLQDS VPCKIRAKRG CATHPRSIAE RVRRTKISER MRKLQEVVPN MEKQTNTSDM  360
LDLAVDYIKE LRRQVKMLSD NQANCNCSAK RRRS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00646	PBM	Transfer from LOC_Os08g39630	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011080320.1	1e-152	transcription factor bHLH130
TrEMBL	A0A0H3YC40	1e-153	A0A0H3YC40_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.D00568.1.p	1e-113	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4605	22	39