PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100087710001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 103aa MW: 12288.4 Da PI: 10.3246 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 38.1 | 2.6e-12 | 2 | 29 | 29 | 56 |
HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 29 ereeLAkklgLterqVkvWFqNrRakek 56 ++++LA++l+L rqV vWFqNrRa+ k Ote100087710001|100087710001 2 QKQDLARELKLRPRQVEVWFQNRRARTK 29 89************************98 PP | |||||||
2 | HD-ZIP_I/II | 90.7 | 1.8e-29 | 1 | 62 | 27 | 88 |
HD-ZIP_I/II 27 erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ++K++lareL+l+prqv+vWFqnrRARtk+kq+E+dye+Lk+++++l+een+rL+ke ++L+ Ote100087710001|100087710001 1 KQKQDLARELKLRPRQVEVWFQNRRARTKLKQTEVDYEFLKKCCETLSEENRRLQKELKALK 62 69*********************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 13.378 | 1 | 31 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.03E-6 | 1 | 32 | No hit | No description |
Pfam | PF00046 | 9.3E-10 | 2 | 29 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.6E-11 | 2 | 38 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.01E-10 | 2 | 40 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 6 | 29 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 2.5E-9 | 31 | 62 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 3.8E-18 | 31 | 71 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
KQKQDLAREL KLRPRQVEVW FQNRRARTKL KQTEVDYEFL KKCCETLSEE NRRLQKELKA 60 LKLAHPLYMQ LPAATLTMCP WCERIRGGAA VENKPQFLHS LHQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099420.1 | 2e-50 | homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 5e-44 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A4D9ATU0 | 4e-50 | A0A4D9ATU0_SALSN; Homeobox-leucine zipper protein | ||||
STRING | PGSC0003DMT400055199 | 2e-48 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Publications ? help Back to Top | |||
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