PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100087510011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

GRAS

Protein Properties

Length: 676aa MW: 76548.5 Da PI: 6.8647

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100087510011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	394.8	8.9e-121	305	676	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 l++lL+ cA+av+++d ++a+ +L++++++++p+gd mqRla+yf+ +L+ar+a++++++yk+l +ts ++ l+a+ Ote100087510011\|100087510011 305 LRTLLTFCAQAVAADDRRAANDFLKQIRQHSTPTGDGMQRLAHYFADGLEARMAGKGTQIYKSLINLPTS---AADILKAY 382 5789**********************************************************999998...8*** PP GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160 ++++ ++P+ k+s++ aN++I++ e+ +++HiiDf+i G+QWp++lq L++Rp+gpp+lRiTg++ p +g + ++ee Ote100087510011\|100087510011 383 HTYVATCPFRKMSNFFANKTIMNVSEKVKKLHIIDFGILFGFQWPCFLQRLSNRPGGPPKLRITGIDFPCPGfrPSIRVEE 463 *****************************************************************999999** PP GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241 tg rLa++Ae+++vpfefnv +a+++e+++le+Lr++++E++aV++ ++ ++llde+v ++s+r+ vL+l+k+++P v+v+ Ote100087510011\|100087510011 464 TGMRLARYAETCKVPFEFNV-IAQKWETIKLEDLRIEEDEMVAVSCLFNFKNLLDETVVVNSPRNMVLNLIKKMKPAVFVL 543 ***************9.7******************************************************* PP GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322 ++ +n++ F +rf eal +ys+lfd+++a++pre +er+ +Er l+gre++nv+acegaer+er et+++W++r ++a Ote100087510011\|100087510011 544 GIKNGAYNAPFFITRFREALFHYSSLFDMVDANIPREVDERMLIERILFGREATNVIACEGAERIERPETYKQWQARNTRA 624 ***************************************************************************** PP GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 GF+++pl+e++++ a+ ++ + + + v+e+ ++l++gWk+r L+++S+Wr Ote100087510011\|100087510011 625 GFEQLPLDEEITSMARKRVKSSYHKDFVVDEDGHWLLFGWKGRILYALSSWR 676 *******************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.281	279	656	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.1E-118	305	676	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence Send to blast
MMNGGYCKIQ SHGPEIWCYD GDRRTVPVFS DHLGNLPSSS PVVRTNGDAG AQCDSPEDLD 60 FSDALLKYIN HILMEEDVEE KACVFPESAA LQAAEKSFYA VIGERYPASK DYQHKSSSDQ 120 TFEHPDPDWN SNSKSDRDAT RNNSESTSQC SYASSSCNGS VVEGLVDSPV STFRVPNMFG 180 DSESAMQFKK GVEEAIKFLP NGSNLFKVEN KIDNDETVDV LRRKKNPHNE STDLQEQRSN 240 KQSAIFSDST ASPDMFDRVL LCSGGRNDTA LREALNEITR NNTQQSDQPH GSNKKKQGKR 300 NVVDLRTLLT FCAQAVAADD RRAANDFLKQ IRQHSTPTGD GMQRLAHYFA DGLEARMAGK 360 GTQIYKSLIN LPTSAADILK AYHTYVATCP FRKMSNFFAN KTIMNVSEKV KKLHIIDFGI 420 LFGFQWPCFL QRLSNRPGGP PKLRITGIDF PCPGFRPSIR VEETGMRLAR YAETCKVPFE 480 FNVIAQKWET IKLEDLRIEE DEMVAVSCLF NFKNLLDETV VVNSPRNMVL NLIKKMKPAV 540 FVLGIKNGAY NAPFFITRFR EALFHYSSLF DMVDANIPRE VDERMLIERI LFGREATNVI 600 ACEGAERIER PETYKQWQAR NTRAGFEQLP LDEEITSMAR KRVKSSYHKD FVVDEDGHWL 660 LFGWKGRILY ALSSWR

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence Send to blast

MMNGGYCKIQ SHGPEIWCYD GDRRTVPVFS DHLGNLPSSS PVVRTNGDAG AQCDSPEDLD  60
FSDALLKYIN HILMEEDVEE KACVFPESAA LQAAEKSFYA VIGERYPASK DYQHKSSSDQ  120
TFEHPDPDWN SNSKSDRDAT RNNSESTSQC SYASSSCNGS VVEGLVDSPV STFRVPNMFG  180
DSESAMQFKK GVEEAIKFLP NGSNLFKVEN KIDNDETVDV LRRKKNPHNE STDLQEQRSN  240
KQSAIFSDST ASPDMFDRVL LCSGGRNDTA LREALNEITR NNTQQSDQPH GSNKKKQGKR  300
NVVDLRTLLT FCAQAVAADD RRAANDFLKQ IRQHSTPTGD GMQRLAHYFA DGLEARMAGK  360
GTQIYKSLIN LPTSAADILK AYHTYVATCP FRKMSNFFAN KTIMNVSEKV KKLHIIDFGI  420
LFGFQWPCFL QRLSNRPGGP PKLRITGIDF PCPGFRPSIR VEETGMRLAR YAETCKVPFE  480
FNVIAQKWET IKLEDLRIEE DEMVAVSCLF NFKNLLDETV VVNSPRNMVL NLIKKMKPAV  540
FVLGIKNGAY NAPFFITRFR EALFHYSSLF DMVDANIPRE VDERMLIERI LFGREATNVI  600
ACEGAERIER PETYKQWQAR NTRAGFEQLP LDEEITSMAR KRVKSSYHKD FVVDEDGHWL  660
LFGWKGRILY ALSSWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-55	305	676	5	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085020.1	0.0	scarecrow-like protein 14
Refseq	XP_011085021.1	0.0	scarecrow-like protein 14
Refseq	XP_011085022.1	0.0	scarecrow-like protein 14
Refseq	XP_011085023.1	0.0	scarecrow-like protein 14
Refseq	XP_011085025.1	0.0	scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A022Q080	0.0	A0A022Q080_ERYGU; Uncharacterized protein
STRING	Migut.F00778.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]