PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100086990021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB | ||||||||
Protein Properties | Length: 239aa MW: 27286.9 Da PI: 8.0893 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.2 | 1.8e-08 | 21 | 68 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 r WT+eE + + a ++ + +W ++a++++ g++ +++++ + Ote100086990021|100086990021 21 RSTWTKEENKMFESALVMFEEEapdRWFKVAAMIP-GKSVYDVINQYKE 68 789*****************99*************.*********9975 PP | |||||||
2 | Myb_DNA-binding | 45.1 | 2.4e-14 | 118 | 162 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++ + +++G+g+Wk I+r + +t+ q+ s+ qky Ote100086990021|100086990021 118 PWTEDEHRRFLMGLEKHGKGDWKNISRNFVVSKTPTQVASHAQKY 162 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.933 | 19 | 73 | IPR017884 | SANT domain |
SMART | SM00717 | 1.2E-7 | 20 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-7 | 21 | 68 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.51E-11 | 22 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.34E-6 | 23 | 70 | No hit | No description |
PROSITE profile | PS51294 | 19.066 | 111 | 167 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.44E-16 | 112 | 166 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-18 | 114 | 166 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.7E-11 | 115 | 165 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-11 | 115 | 162 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.31E-9 | 118 | 162 | No hit | No description |
Pfam | PF00249 | 1.3E-11 | 118 | 162 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
METLFPSQVV SNSSGFVQEG RSTWTKEENK MFESALVMFE EEAPDRWFKV AAMIPGKSVY 60 DVINQYKELV ADVSNIEAGL VPIPGYLSST FTFELHRGFD VCRKRARVLD QERKKGVPWT 120 EDEHRRFLMG LEKHGKGDWK NISRNFVVSK TPTQVASHAQ KYYLRQLTGG KDKRRPSIHD 180 LTIHLTGKDA TTTCFLQKSD QPKNNAEVLL NWNDNHYGDL MAFDSSFGGS FFAYPCNMA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00347 | DAP | Transfer from AT3G11280 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076737.1 | 1e-107 | transcription factor DIVARICATA-like | ||||
Refseq | XP_011076738.1 | 1e-107 | transcription factor DIVARICATA-like | ||||
Refseq | XP_011084945.1 | 1e-107 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 4e-73 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | C5I9W3 | 1e-102 | C5I9W3_9DIPS; DIV2B protein | ||||
STRING | VIT_13s0019g03370.t01 | 1e-95 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Publications ? help Back to Top | |||
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