PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100084880061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ARF
Protein Properties Length: 635aa    MW: 70348.7 Da    PI: 7.952
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100084880061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.16.8e-23118219199
                                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                   f k+lt+sd+++ g +++p+ +ae++         ++ +   +  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L
  Ote100084880061|100084880061 118 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--NILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSAFVNHKKL 196
                                   89****************************997656666..69999*********************************** PP

                                   -TT-EEEEEE-SSSEE..EEEEE-S CS
                            B3  75 kegDfvvFkldgrsefelvvkvfrk 99 
                                    +gD++vF +    ++ l+v+++r+
  Ote100084880061|100084880061 197 VAGDSIVFLRG--GNGDLCVGIRRA 219
                                   *********54..67777****996 PP
2Auxin_resp103.72.2e-34259342183
                    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWr 80 
                                   aa+ a++++ F+++Y+Pras++eF+vk++ v++al+v+++ GmRfkmafetedss++++ +Gt+++v+ +dp++ p+S+Wr
  Ote100084880061|100084880061 259 AATLAASGKSFDILYYPRASNPEFCVKASLVNAALQVRWCSGMRFKMAFETEDSSRISWfMGTITSVQPVDPIQCPDSPWR 339
                                   688999*************************************************************************** PP

                    Auxin_resp  81 sLk 83 
                                   +L+
  Ote100084880061|100084880061 340 LLQ 342
                                   *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.6E-38111231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.76E-29113221IPR015300DNA-binding pseudobarrel domain
CDDcd100174.45E-22117218No hitNo description
PROSITE profilePS5086312.844118220IPR003340B3 DNA binding domain
SMARTSM010191.9E-21118220IPR003340B3 DNA binding domain
PfamPF023624.4E-21118219IPR003340B3 DNA binding domain
PfamPF065077.6E-30259342IPR010525Auxin response factor
PROSITE profilePS5174516.406537615IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MIAFMESKER SERCLDSQLW HACAGSMVQM PPVNSKVFYF PQGHFEHVSG NLDFRNCPRF  60
PAYVPCKVSA VKFLADPETD EVFAKIRLVP IAEDEVDLAK NGAVKVNGFE NQENTTSFAK  120
TLTQSDANNG GGFSVPRYCA ETIFPRLDYS ADPPVQNILA KDVHGEVWKF RHIYRGTPRR  180
HLLTTGWSAF VNHKKLVAGD SIVFLRGGNG DLCVGIRRAK NNGIACAPHV EDESKMTSSS  240
SGKRCVNKRG VKMEDAIEAA TLAASGKSFD ILYYPRASNP EFCVKASLVN AALQVRWCSG  300
MRFKMAFETE DSSRISWFMG TITSVQPVDP IQCPDSPWRL LQVRWDEPDL LQNVKRVNPW  360
SIELVSNIPS FHLSPFSPPH KKIRLAQHPD FSLDGRLPLP AFNHLLGSSY PFGCLSDNAP  420
AGMQGARHGQ YTLTLSDLQL SKLADVRPLH RASPHTEPGH DANISCQLSM GISAQGSGKS  480
VNGKEATLML FGQRILTEKQ ISGSCSSNTS SVGNTSDGSG SVHNRDERSS SELSSETGHC  540
KVFMESEDVG RLLDLSLLGS YEEVQRRLAS MFDVEISEIL NNVLYRDNAG AVRQLGEEPF  600
SKFAKTARRL RVVADLQYFF SQVLERRRSV GNLFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-791536351388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094651.10.0auxin response factor 18
RefseqXP_011094652.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A191T8T30.0A0A191T8T3_SALMI; Auxin response factor
STRINGSolyc09g007810.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]