PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100084370071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 174aa MW: 19313.1 Da PI: 8.5064 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 67 | 89 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+ksF++ L H +H Ote100084370071|100084370071 67 YQCKTCSKSFPSFQALGGHRASH 89 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 11.6 | 0.00087 | 130 | 152 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H Ote100084370071|100084370071 130 HECSICGAEFGSGQALGGHMRRH 152 78********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 5.8E-13 | 66 | 91 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.47E-9 | 66 | 89 | No hit | No description |
SMART | SM00355 | 0.035 | 67 | 89 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.138 | 67 | 94 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 69 | 89 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.47E-9 | 125 | 152 | No hit | No description |
Pfam | PF13912 | 2.5E-13 | 129 | 154 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.026 | 130 | 152 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.349 | 130 | 152 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 132 | 152 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 174 aa Download sequence Send to blast |
RSKRPRLSSP SPLALTITAD LSFGVVSDLS PCNSAVDEEE QDMANCLILL AKGQSQRQTP 60 PGAEEAYQCK TCSKSFPSFQ ALGGHRASHK KPNKPTDLDE RKVLMREKQE CFTDDSTNLS 120 LQISNKIRVH ECSICGAEFG SGQALGGHMR RHRPIAXXXX XXXXXXXPVE RRRE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094585.1 | 6e-56 | zinc finger protein ZAT5-like | ||||
Swissprot | Q681X4 | 2e-31 | ZAT5_ARATH; Zinc finger protein ZAT5 | ||||
TrEMBL | A0A4D9AIX1 | 7e-59 | A0A4D9AIX1_SALSN; Uncharacterized protein | ||||
STRING | Migut.L01720.1.p | 3e-43 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1262 | 24 | 80 |
Publications ? help Back to Top | |||
---|---|---|---|
|