PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100084360001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 186aa    MW: 21349 Da    PI: 6.6774
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100084360001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.4e-191366356
                                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                  ++ +f+++q++ Le+ Fe++  p  + +++LA+klgL  rqV +WFqN+Ra+ k
  Ote100084360001|100084360001 13 RKKRFNDDQVKSLETTFESEARPELHLKQHLASKLGLHPRQVAIWFQNKRARSK 66
                                  4567************************************************98 PP
2HD-ZIP_I/II103.81.5e-3313104293
                   HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 
                                   +k+r++++qvk+LE++Fe+e + e + K++la++Lgl+prqva+WFqn+RAR k+kq+E++y++Lk++y +l+ + e+L+k
  Ote100084360001|100084360001  13 RKKRFNDDQVKSLETTFESEARPELHLKQHLASKLGLHPRQVAIWFQNKRARSKLKQIEREYSVLKSNYHNLALQFEALRK 93 
                                   8******************************************************************************** PP

                   HD-ZIP_I/II  83 eveeLreelke 93 
                                   e+++L  ++++
  Ote100084360001|100084360001  94 ENQTLLIQVQK 104
                                   *****988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.309868IPR001356Homeobox domain
SMARTSM003892.5E-15972IPR001356Homeobox domain
SuperFamilySSF466895.13E-161280IPR009057Homeodomain-like
CDDcd000861.18E-121369No hitNo description
PfamPF000464.6E-161366IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-161475IPR009057Homeodomain-like
PRINTSPR000318.0E-53948IPR000047Helix-turn-helix motif
PROSITE patternPS0002704366IPR017970Homeobox, conserved site
PRINTSPR000318.0E-54864IPR000047Helix-turn-helix motif
PfamPF021832.1E-1568108IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MSSNTNKISK HSRKKRFNDD QVKSLETTFE SEARPELHLK QHLASKLGLH PRQVAIWFQN  60
KRARSKLKQI EREYSVLKSN YHNLALQFEA LRKENQTLLI QVQKLSKMAD SNDVEEIDKN  120
QIKLDINSPE ICMPLGGEAN GRVDYLEDDD ALNMAQIAES SLASPENGCS LASCNFLENT  180
AQWWEF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012842101.14e-75PREDICTED: homeobox-leucine zipper protein ATHB-12-like
SwissprotP468971e-30ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A4D8YB518e-96A0A4D8YB51_SALSN; Homeobox-leucine zipper protein
STRINGMigut.E00626.1.p1e-74(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102732125
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]